Figure 3.

Diel Cycles of Transcript Levels and Translation States Were Modeled as Sine Waves.

(A) Examples of the fit of representative translation state data to sine waves. The R² indicates the fraction of the variation in TL that is explained by the sine model.

(B) Distributions of R² values for TX and TL in the wild type and CCA1-ox. Genes in CCA1-ox have a greater tendency to behave like sine waves in terms of their TX and TL.

(C) Genes with an R² >0.6 were selected and were binned according to their estimated peak TX and peak TL under the assumption of a sine model. For wild-type TL, the median confidence interval for peak TL was estimated by bootstrapping to be ±1.8 h (5th to 95th percentile range 1.0 to 2.6 h). In (A), PGR5 is photosystem I protein PROTON GRADIENT REGULATION5. LHCB3 is light-harvesting chlorophyll a/b binding protein 3 of photosystem II. At5g08570 is annotated as a pyruvate kinase family protein. MRPL11 is protein 11 of the mitochondrial ribosomal large subunit.