Table 1. Changes in Peak Translation upon Disruption of the Circadian Clock in CCA1-ox.
| Peak in Wild Type | Peak in CCA1-ox | |||||||
|---|---|---|---|---|---|---|---|---|
| Time | 6 am | 12 pm | 6 pm | 12 am | 6 am | 12 pm | 6 pm | 12 am |
| ZT | 0 | 6 | 12 | 18 | 0 | 6 | 12 | 18 |
| GO Enrichment Term | ||||||||
| Translation | ||||||||
| Cytosolic ribosome | – | – | – | X | X | – | – | – |
| RNA methylation | – | – | – | X | X | – | – | – |
| Prefoldin complex | – | – | – | X | X | – | – | – |
| Signal recognition particle | – | – | – | – | – | X | – | – |
| tRNA metabolism | – | – | – | – | – | X | – | – |
| tRNA aminoacylation | – | – | – | – | – | X | X | – |
| rRNA processing | – | – | – | – | – | X | – | – |
| mRNA catabolism | – | – | – | – | – | – | – | X |
| Mitochondrion | ||||||||
| Inner membrane | – | – | – | X | X | – | – | – |
| Envelope | – | – | – | X | X | – | – | – |
| Photorespiration | – | – | – | X | X | – | – | – |
| Plastid | ||||||||
| Thylakoid | X | – | – | – | X | X | – | – |
| Photosystem I | X | – | – | X | X | – | – | – |
| Photosystem II | X | – | – | – | X | – | – | – |
| Photosystem II assembly | – | – | – | X | – | X | – | – |
| Stroma | – | – | – | – | – | X | – | – |
| Plastid nucleoid | – | – | – | – | – | X | – | – |
| Plastid envelope | – | – | – | – | – | X | – | – |
| Protein targeting to plastid | – | – | – | – | – | X | – | – |
| Carbohydrate synthesis | – | – | – | – | – | – | X | – |
| Carbohydrate catabolism | – | – | – | – | X | – | – | – |
| Carotenoid synthesis | – | – | – | – | – | X | X | – |
| Sulfur compound synthesis | X | – | – | – | – | X | – | – |
| Amino acid synthesis | – | – | – | – | X | X | – | – |
| Nucleus | ||||||||
| Nuclear chromatin | – | – | – | – | – | X | X | – |
| Chromatin silencing | – | – | – | – | – | – | – | X |
| DNA methylation | – | X | – | – | – | – | – | – |
| Histone lysine methylation | – | – | – | – | – | – | X | – |
| RNA Pol IV/V | – | – | – | X | – | – | – | – |
| Cell division | ||||||||
| Cytokinesis or cell cycle | – | X | – | – | – | – | X | X |
| Microtubule | – | X | – | – | – | – | X | – |
| Other | ||||||||
| V-type H+ ATPase | – | – | – | X | X | – | – | – |
| Proteasome | – | – | – | X | – | X | – | – |
| Phosphatidylinositol synthesis | – | – | – | X | X | – | – | – |
| ATP binding (kinase, helicase) | – | – | – | – | – | – | X | X |
| Protein phosphorylation | – | – | – | – | – | – | – | X |
| Protein dephosphorylation | X | – | – | – | – | – | – | – |
| Divalent metal ion transport | X | – | – | – | X | – | – | – |
Cohorts of mRNAs with similar diel ribosome loading cycles were searched for enriched functional categories using Gene Ontology (GO). An X indicates that the term is enriched among the mRNAs whose translation peaks at the given time; a dash indicates absence of enrichment. Detailed data are in Figure 5 (wild type) and Supplemental Figure 10 (CCA1-ox).