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. 2015 Jul 18;25(1):219–230. doi: 10.1002/pro.2731

Table 1.

Computational Details of the 2D‐US Simulations

Residues Linker conformation Kinase domain conformation # Windows ns/window k kcal/(mol·Å2) d w (Å)
WT 253‐523 Restricted↔released Inactive 245 30 10 0.5
WT 253‐523 Restricted↔released Active 238 30 10 0.5
W260A 253‐523 Restricted↔released Inactive 245 40 10 0.5
WT 260‐521 n/a Inactive↔active 1101 15 20 0.25
W260A 260‐521 n/a Inactive↔active 681 16 20 0.5

Supporting Information Fig. S3 shows the sequence and the structural motifs of Src which are utilized in the present work. The conformation of the kinase domain in each one of the top three constructs was not subject to any restraining potential and was found to be stable during umbrella sampling calculations of the linker region. Y416 in the A‐loop is not phosphorylated in all five sets of umbrella sampling calculations. “n/a” stands for not applicable.