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. 2015 Jun 11;25(1):87–102. doi: 10.1002/pro.2713

Table 1.

Molecular Composition and Basic Statistics of the Simulated Systems

Exp. ff99SB ff14SB ff14ipq C36 ff14SB_solv
Protein molecule 12 12 12 12 1
Force field Amber ff99SB Amber ff14SB Amber ff14ipq Charmm 36 Amber ff14SB
Solvent model tip3p tip4p‐ew tip4p‐ew tip3p tip4p‐ew
Water (H2O) 55.5M 3358 3358 3278 3268 9375
Acetate (CH3COO) 100 mM 39 39 39 39
Nitrate ( NO3) 250 mM 91 91 91 91
Sodium (Na+) 250 mM 22 22 22 22 8(Cl)
Total atoms 34,265 34,265 34,025 33,995 39,468
Density (g/cm3) 1.281 1.281 1.274 1.273 1.019
Equilib. length (ns) 176 176 196 196 28
Production length (ns) 3000 3000 1000 1000 1000
Mean press. (bar) 1 129 ± 323 −25 ±322 −22 ± 304 82 ± 310 0.8 ± 141
Mean trajectory RMSD (Å) 0.75/1.27 0.65/1.15 0.76/1.25 0.78/1.37 0.95/1.47

Last line provides the mean instantaneous backbone atom/all heavy atom RMSD after optimal alignment to the deposited model as a reference over the course of each trajectory.