Table 1. Estimates of total LOD scores and total variation explained by genotype effects at the QTL sites (Q).
| Infection by | Mean square | LOD score | % Variance explained | Model |
|---|---|---|---|---|
| Pasteuria (proportions) | 245.00 | 29.44 | 50.10 | y~Q1 |
| Pasteuria (binary) | 7.816 | 29.53 | 50.04 | y~Q1 |
| Hamiltosporidium (horizontal infection) | 0.9574 | 20.43 | 38.276 | y~Q2+Q3+Q4+ Q5+Q6+Q2:Q4 |
| Hamiltosporidium (vertical infection) | 7.0873 | 6.154 | 13.526 | y~Q4 |
Abbreviation: QTL, quantitative trait loci.
Sites refer to the D. magna genome and are numbered continuously (compare with Table 2): Q1=scaffold00288_965, Q2=scaffold00773_975, Q3=scaffold02114_353, Q4=scaffold00606_2933, Q5=contig29113_349, Q6=contig14698_81. All four models are significant (P<0.0001). Total degrees of freedom were 194 in each case.