Table 2. Infection traits and their corresponding linkage group (lg).

Trait	lg	Marker_SNP nucleotide	Sequence (5′–3′)
Pasteuria infection	3	scaffold 00288_965	TTGTTAAAGTCCATTGTaAGTGTTTAAGTAGCAAA
Hamiltosporidium horizontal infection	3A	scaffold 00773_975	ATCGAATCAGCATTTTaTCCTCCTAATTCAAC
Hamiltosporidium horizontal infection	3B	scaffold 02114_353	ACACTGTCGAAAAAAAAaTTTTGATTTCCCTTAAAC
Hamiltosporidium horizontal infection	6	scaffold 00606_2933	TTGTAGATTTTACCGAaCTTTTATTCTTACATCAC
Hamiltosporidium horizontal infection	8A	contig 29113_349	CGATATATCTTTCAAAACaATCTATATGGATACAATC
Hamiltosporidium horizontal infection	8B	contig 14698_81	TGGCGATAAAGGACaTTGAATCAAAGGACG
Hamiltosporidium vertical infection	6	scaffold 00606_2933	TTGTAGATTTTACCGAaCTTTTATTCTTACATCAC

Abbreviation: SNP, single nucleotide polymorphism.

Infection traits and their corresponding linkage group (compare Figures 1 and 2), with marker name and position of SNP nucleotide and sequences on both sides of the SNP (indicated by lowercase letters).