Table 4.
Number of genes associated with 25 general COGs functional categories
| Code | Value | % of totala | Description |
|---|---|---|---|
| J | 163 | 3.97 | Translation |
| A | 0 | 0 | RNA processing and modification |
| K | 265 | 5.34 | Transcription |
| L | 235 | 4.62 | Replication, recombination, repair |
| B | 1 | 0.02 | Chromatin structure and dynamics |
| D | 40 | 0.92 | Cell cycle control, mitosis, meiosis |
| Y | 0 | 0 | Nuclear structure |
| V | 65 | 1.46 | Defense mechanisms |
| T | 197 | 3.57 | Signal transduction mechanisms |
| M | 184 | 3.60 | Cell wall/membrane biogenesis |
| N | 60 | 1.24 | Cell motility |
| Z | 0 | 0 | Cytoskeleton |
| W | 0 | 0 | Extracellular structures |
| U | 46 | 0.97 | Intracellular trafficking and secretion |
| O | 122 | 2.73 | Posttranslational modification, protein turnover, chaperones |
| C | 211 | 4079 | Energy production and conversion |
| G | 183 | 3.85 | Carbohydrate transport and metabolism |
| E | 397 | 9.14 | Amino acid transport and metabolism |
| F | 91 | 2.09 | Nucleotide transport and metabolism |
| H | 107 | 2.46 | Coenzyme transport and metabolism |
| I | 133 | 3.15 | Lipid transport and metabolism |
| P | 218 | 4.87 | Inorganic ion transport and metabolism |
| Q | 81 | 1.79 | Secondary metabolites biosynthesis, transport, catabolism |
| R | 428 | 9.41 | General function prediction only |
| S | 291 | 6.41 | Function unknown |
| — | 3518 | 33.47 | Not in COGs |
COGs, Clusters of Orthologous Groups.
a
Total is based on total number of protein coding genes in annotated genome.