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. 2016 Mar 31;11(3):e0152406. doi: 10.1371/journal.pone.0152406

Table 3. List of early seedling vigor (ESV) traits associated polymorphic microsatellite markers in rice (1).

S.No Marker Traits associated Chr Amplicon Size (bp) Tm Reference
1 RM13 SL,RL,DW,GR,SDW 5 141 55 [19]
2 RM125 GR, GP and GI 7 127 55 [20]
3 RM26 TDW,SDW,RDW,VI,RARL,SL,GR 5 112 55 [2124]
4 RM87 SDW 5 151 55 [19,21]
5 RM3839 SDW 4 218 50 [25]
6 RM161 RL,DW,SEV,FV.GR 5 187 61 [26]
7 RM218 SL,FV 3 148 55 [27]
8 RM228 SS,SL,FW,WS 10 154 55 [2627]
9 RM9 GR,SDW,SFW 1 136 55 [20]
10 RM6091 GR,GI 11 126 50 [20]
11 RM7075 GR 1 155 50 [20]
12 RM258 RDW, 10 148 55 [21]
13 RM3428 GP,GI,NL,SS 11 156 55 [20]
14 RM334 SDW, 5 182 55 [19, 21]
15 RM148 GR,SL,SEV,FW 3 129 55 [19, 26, 27]
16 RM250 SDW, 2 153 55 [28]
17 RM221 SEV, 2 192 55 [26]
18 RM264 GR,SL,RL 8 178 55 [19]
19 RM230 GR,SL,RL 8 257 55 [19]
20 RM253 SL, GR, 6 141 55 [19, 23]
21 RM85 GR,SL,RL,SEV,FW 3 107 55 [19, 26]
22 RM340 SL,GP 6 163 55 [19, 20]
23 RM249 SV, FV, 5 121 55 [19]
24 RM225 SV,GR, SDW, SL 6 140 55 [19, 29]
25 RM263 SL,SDW 2 199 55 [22]
26 RM30 GR, SDW, SL 6 105 55 [29]
27 RM223 SW,GR,SL,SEV 8 165 55 [19, 26]
28 RM1339 SL 1 144 55 [30]
29 RM16 SL,SDW,RL,GR 3 181 55 [19]
30 RM252 SEV,GP,GR,RA 5 216 55 [19, 21, 26]
31 RM336 GR, SDW, SL 7 154 55 [29]
32 RM8085 SL, 1 126 55 [30]
33 RM19 GR, SDW, SL 12 226 55 [29]
34 RM6 SDW 2 163 55 [22]
35 RM168 SL,DW,GR,RL,SEV,FW 3 116 55 [19, 26]
36 RM224 GR, GR, SDW, SL 11 157 55 [29, 31]
37 RM7389 SL 3 111 55 [30]
38 RM21 GR, SDW, SL 11 157 55 [29]
39 RM341 GR, 2 172 55 [23]

SDW-Shoot dry weight; SL-Shoot length; RDW-Root dry weight; RL-Root length; TFW-Total fresh weight; TDW-Total dry weight; RA-Root activity; GP-Germination percentage; GR-Germination rate; GI-Germination index; FGC-First germination count; EGC-Ending germination count; ME-Mesocotyl elongation; PL-Plumule length; COL-Coleorhiza length; CL-Coleoptile length; VI-Vigor index; RSC-Reducing sugar content; SW-Seed weight, SE-Seedling establishment, SFW-Seedling fresh weight, SS-Seed size, SEV-Seedling early vigor, LA-Leaf area, NL-Number of leafs; SR-Seed reserve utilization efficiency, WS-Weight of mobilized seed reserve, FV-Field vigor, SV-Seed vigor.