Table 5. Association of marker alleles with phenotypic traits of early seedling vigor in rice under direct seeded situation using GLM and MLM (Q+K) model.
| Trait | Marker | Chromosome | GLM Model | MLM (Q+K) model | ||||
|---|---|---|---|---|---|---|---|---|
| F ratio | p-value | R2 | F ratio | p-value | R2 | |||
| Leaf length (14) | RM13 | 1 | 6.65 | 0.01 | 0.07 | 6.82 | 0.01 | 0.07 |
| RM334 | 5 | 6.24 | 0.01 | 0.06 | - | - | - | |
| Leaf length (28) | RM223 | 8 | 11.58 | 0.00 | 0.10 | 8.85 | 0.00 | 0.08 |
| RM6 | 2 | 4.53 | 0.04 | 0.04 | - | - | - | |
| Leaf width (14) | RM230 | 8 | 5.20 | 0.02 | 0.05 | 4.97 | 0.03 | 0.05 |
| RM125 | 7 | 4.17 | 0.04 | 0.04 | 4.03 | 0.05 | 0.04 | |
| RM218 | 3 | 3.91 | 0.05 | 0.04 | - | - | - | |
| No. of leaf (14) | RM224 | 11 | 5.90 | 0.02 | 0.06 | - | - | - |
| RM21 | 11 | 4.41 | 0.04 | 0.05 | - | - | - | |
| RM13 | 5 | 4.11 | 0.05 | 0.04 | - | - | - | |
| Root length (14) | RM3839 | 4 | 4.60 | 0.03 | 0.04 | 5.10 | 0.03 | 0.05 |
| RM230 | 8 | 4.33 | 0.04 | 0.04 | 4.78 | 0.03 | 0.05 | |
| Root length (28) | RM249 | 5 | 5.35 | 0.02 | 0.05 | 4.95 | 0.03 | 0.05 |
| RM6091 | 11 | 4.19 | 0.04 | 0.04 | - | - | - | |
| Root weight (14) | RM7075 | 1 | 5.21 | 0.02 | 0.05 | - | - | - |
| RM249 | 5 | 4.82 | 0.03 | 0.05 | 4.74 | 0.03 | 0.05 | |
| Root weight (28) | RM250 | 2 | 4.06 | 0.05 | 0.04 | 3.92 | 0.05 | 0.04 |
| Shoot length (14) | RM13 | 1 | 5.43 | 0.02 | 0.05 | 4.75 | 0.03 | 0.05 |
| RM334 | 5 | 5.26 | 0.02 | 0.05 | - | - | - | |
| RM16 | 3 | 3.99 | 0.05 | 0.04 | 5.60 | 0.02 | 0.06 | |
| Shoot weight (28) | RM341 | 2 | 5.50 | 0.02 | 0.05 | 5.26 | 0.02 | 0.05 |
| RM224 | 11 | 4.10 | 0.05 | 0.04 | 4.23 | 0.04 | 0.04 | |
| Vigor index (14) | RM341 | 2 | 4.37 | 0.04 | 0.04 | 5.10 | 0.03 | 0.05 |
| Vigor index (28) | RM341 | 2 | 4.35 | 0.04 | 0.05 | 4.85 | 0.03 | 0.05 |