Table 2.
Read trimming and alignment information.
| Sample name | Raw reads | Raw bases | Reads after trimming | Bases after trimming | Aligned reads | % Raw reads aligned (%) |
|---|---|---|---|---|---|---|
| Cos-NT1 | 42,952,132 | 2,154,871,134 | 38,607,172 | 1,501,729,353 | 36,207,885 | 84.3 |
| Cos-NT2 | 38,735,131 | 1,942,967,564 | 34,782,083 | 1,355,688,866 | 32,331,306 | 83.5 |
| Cos-NT3 | 44,044,083 | 2,209,603,724 | 39,381,284 | 1,528,332,458 | 36,772,731 | 83.5 |
| Cos-LV1 | 43,474,834 | 2,180,981,048 | 39,011,336 | 1,518,169,588 | 36,519,959 | 84.0 |
| Cos-LV2 | 48,201,304 | 2,417,879,938 | 43,104,467 | 1,675,700,194 | 39,878,182 | 82.7 |
| Cos-LV3 | 40,265,842 | 2,019,730,082 | 35,969,848 | 1,396,805,479 | 33,394,305 | 82.9 |