Table 1. Comparative genomics of thiamin biosynthesis in the Pelagibacterales.
Strain | thiC | thiD | thiE_0583a | thiE_0360a | thiF | thiS | thiG | csdBb | thiL | thiB | tenA |
---|---|---|---|---|---|---|---|---|---|---|---|
Ca. P. ubique | Absent | 637671479 | 637671458 | 637671224 | 637671266 | 637671603 | 637671604 | 637671616 | 637671913 | Absent | Absent |
HTCC1002 | Absent | 639129819 | 639129840 | 639130075 | 639130033 | 639129702 | 639129701 | 639130662, 639129689 | 639130810 | Absent | Absent |
HTCC7211 | Absent | 2503353714 | 2503353735 | 2503352435 | 2503352394 | 2503352877 | 2503352878 | 2503352890 | 2503353193 | Absent | Absent |
HTCC9565 | Absent | 2503364149 | 2503364170 | 2503364413 | 2503364372 | 2503364883 | 2503364884 | 2503364896 | 2503365124 | Absent | Absent |
HIMB5 | Absent | 2504109247 | 2504109269 | 2504109551 | 2504109508 | 2504108506 | 2504108507 | 2504108519, 2504109389 | 2504108893 | Absent | Absent |
HIMB114 | Absent | 2503356000 | 2503356022 | 2503356319 | 2503356274 | 2503355884 | 2503355883 | 2503355872 | Absent | Absent | Absent |
IMCC9063 | Absent | 2505688345 | 2505688367 | 2505687345 | 2505687250 | 2505687878 | 2505687879 | 2505688259 | Absent | Absent | 2505687352 |
HIMB59 | Absent | Absent | Absent | Absent | 2504110146 | Absent | Absent | 2504110964 | 2504110802 | 2504111022 | Absent |
Gene numbers are IMG/ER Gene IDs (https://img.jgi.doe.gov/er).
There are two copies of thiE in Ca. P. ubique: SAR11_0583 and SAR11_0360.
csdB is predicted to encode the cysteine desulfurase activity necessary for thiazole biosynthesis (see Supplementary Methods).