Table 1. Primers used for the characterization (PCR, cloning/sequencing, 454 pyrosequencing) and quantification (qPCR) of Pyrrhocoroidea and their associated microbiota.
Target | Target taxon | Target gene | Primer name | Primer sequence (5′—>3′) | Fwd./rev. | Length | Use | Reference |
---|---|---|---|---|---|---|---|---|
Hosts | Heteroptera | 18S rRNA | Pyr18S_2F | GGGAGGTAGTGACAAAAAATAACG | Fwd. | 24 | 1 | Li et al., 2005 |
Heteroptera | 18S rRNA | Pyr18S_4F | ATCCTTTAACGAGGATCTATTGG | Fwd. | 23 | 1 | Li et al., 2005 | |
Heteroptera | 18S rRNA | Pyr18S_3R | ACATACTTGGCAAATGCTTTCGC | Rev. | 23 | 1 | Li et al., 2005 | |
Heteroptera | 18S rRNA | Pyr18S_4R | GTTAGAACTAGGGCGGTATCTG | Rev. | 22 | 1 | Li et al., 2005 | |
Heteroptera | COI | C1-J-2183-F | CAACATTTATTTTGATTTTTTGG | Fwd. | 23 | 1 | Li et al., 2005 | |
Heteroptera | COI | TL2-N-3014-R | TCCAATGCACTAATCTGCCATATTA | Rev. | 25 | 1 | Li et al., 2005 | |
Heteroptera | COI | C1-J-2530-F | GGAGTAATTCTAGCCAACTC | Fwd. | 20 | 1 | Li et al., 2005 | |
Heteroptera | COI | C1-N-2609-R | GAATACTGCTCCTATGGATA | Rev. | 20 | 1 | Li et al., 2005 | |
Heteroptera | COII | TK-N3796_rev | ACTATTAGATGGTTTAAGAG | Rev. | 18 | 1 | Simon et al., 1994 | |
Heteroptera | COII | TL-J3033_fwd | TCTAATATGGCAGATTAGTGCA | Fwd. | 20 | 1 | Simon et al., 1994 | |
Symbionts | Coriobacterium/Gordonibacter | 16S rRNA | Cor-2F | GGTAGCCGGGTTGAGAGACC | Fwd. | 20 | 2 | Kaltenpoth et al., 2009 |
Eubacteria | 16S rRNA | rP2 | ACGGCTACCTTGTTACGACTT | Rev. | 21 | 2 | Weisburg et al., 1991 | |
Eubacteria | 16S rRNA | M13F | TGTAAAACGACGGCCAGT | Fwd. | 18 | 2 | Boutin-Ganache et al., 2001 | |
Eubacteria | 16S rRNA | M13R | GGAAACAGCTATGACCATG | Rev. | 19 | 2 | Boutin-Ganache et al., 2001 | |
Clostridium | 16S rRNA | Clostridium_1050-fwd | CTCGTGTCGTGAGATGTTGG | Fwd. | 20 | 3 | Sudakaran et al., 2012 | |
Clostridium | 16S rRNA | Clostridium_1248-rev | GCTCCTTTGCTTCCCTTTGT | Rev. | 20 | 3 | Sudakaran et al., 2012 | |
Klebsiella | 16S rRNA | Klebsiella_250-fwd | CAGCCACACTGGAACTGAGA | Fwd. | 20 | 3 | Sudakaran et al., 2012 | |
Klebsiella | 16S rRNA | Klebsiella_453-rev | GTTAGCCGGTGCTTCTTCTG | Rev. | 20 | 3 | Sudakaran et al., 2012 | |
Gordonibacter | 16S rRNA | D.fas_Egg.2R_qPC | CCGTATCTCAGTCCCAATGT | Rev. | 20 | 3 | This study | |
Gordonibacter | 16S rRNA | Act-2F | GCGAACGGGTGAGTAACAC | Fwd. | 19 | 3 | This study | |
Coriobacterium | 16S rRNA | Gray519F | CAGCMGCCGCNGTAANAC | Fwd. | 18 | 3 | This study | |
Coriobacterium | 16S rRNA | Cor-1R | ACCCTCCCMTACCGGACCC | Rev. | 19 | 3 | Kaltenpoth et al., 2009 | |
Eubacteria | 16S rRNA | Gray28F | GAGTTTGATCNTGGCTCA | Fwd. | 19 | 4 | Ishak et al., 2011 | |
Eubacteria | 16S rRNA | Gray519R | GTNTTACNGCGGCKGCTG | Rev. | 18 | 4 | Ishak et al., 2011 |
Abbreviations: Fwd., forward; qPCR, quantitative PCR; Rev., reverse; rRNA, ribosomal RNA.
Use: (1) amplification and sequencing of host genes, (2) cloning/sequencing of Coriobacteriaceae symbionts, (3) qPCR and (4) 454 sequencing.