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. 2015 May 29;9(12):2587–2604. doi: 10.1038/ismej.2015.75

Table 1. Primers used for the characterization (PCR, cloning/sequencing, 454 pyrosequencing) and quantification (qPCR) of Pyrrhocoroidea and their associated microbiota.

Target Target taxon Target gene Primer name Primer sequence (5′—>3′) Fwd./rev. Length Use Reference
Hosts Heteroptera 18S rRNA Pyr18S_2F GGGAGGTAGTGACAAAAAATAACG Fwd. 24 1 Li et al., 2005
  Heteroptera 18S rRNA Pyr18S_4F ATCCTTTAACGAGGATCTATTGG Fwd. 23 1 Li et al., 2005
  Heteroptera 18S rRNA Pyr18S_3R ACATACTTGGCAAATGCTTTCGC Rev. 23 1 Li et al., 2005
  Heteroptera 18S rRNA Pyr18S_4R GTTAGAACTAGGGCGGTATCTG Rev. 22 1 Li et al., 2005
  Heteroptera COI C1-J-2183-F CAACATTTATTTTGATTTTTTGG Fwd. 23 1 Li et al., 2005
  Heteroptera COI TL2-N-3014-R TCCAATGCACTAATCTGCCATATTA Rev. 25 1 Li et al., 2005
  Heteroptera COI C1-J-2530-F GGAGTAATTCTAGCCAACTC Fwd. 20 1 Li et al., 2005
  Heteroptera COI C1-N-2609-R GAATACTGCTCCTATGGATA Rev. 20 1 Li et al., 2005
  Heteroptera COII TK-N3796_rev ACTATTAGATGGTTTAAGAG Rev. 18 1 Simon et al., 1994
  Heteroptera COII TL-J3033_fwd TCTAATATGGCAGATTAGTGCA Fwd. 20 1 Simon et al., 1994
Symbionts Coriobacterium/Gordonibacter 16S rRNA Cor-2F GGTAGCCGGGTTGAGAGACC Fwd. 20 2 Kaltenpoth et al., 2009
  Eubacteria 16S rRNA rP2 ACGGCTACCTTGTTACGACTT Rev. 21 2 Weisburg et al., 1991
  Eubacteria 16S rRNA M13F TGTAAAACGACGGCCAGT Fwd. 18 2 Boutin-Ganache et al., 2001
  Eubacteria 16S rRNA M13R GGAAACAGCTATGACCATG Rev. 19 2 Boutin-Ganache et al., 2001
  Clostridium 16S rRNA Clostridium_1050-fwd CTCGTGTCGTGAGATGTTGG Fwd. 20 3 Sudakaran et al., 2012
  Clostridium 16S rRNA Clostridium_1248-rev GCTCCTTTGCTTCCCTTTGT Rev. 20 3 Sudakaran et al., 2012
  Klebsiella 16S rRNA Klebsiella_250-fwd CAGCCACACTGGAACTGAGA Fwd. 20 3 Sudakaran et al., 2012
  Klebsiella 16S rRNA Klebsiella_453-rev GTTAGCCGGTGCTTCTTCTG Rev. 20 3 Sudakaran et al., 2012
  Gordonibacter 16S rRNA D.fas_Egg.2R_qPC CCGTATCTCAGTCCCAATGT Rev. 20 3 This study
  Gordonibacter 16S rRNA Act-2F GCGAACGGGTGAGTAACAC Fwd. 19 3 This study
  Coriobacterium 16S rRNA Gray519F CAGCMGCCGCNGTAANAC Fwd. 18 3 This study
  Coriobacterium 16S rRNA Cor-1R ACCCTCCCMTACCGGACCC Rev. 19 3 Kaltenpoth et al., 2009
  Eubacteria 16S rRNA Gray28F GAGTTTGATCNTGGCTCA Fwd. 19 4 Ishak et al., 2011
  Eubacteria 16S rRNA Gray519R GTNTTACNGCGGCKGCTG Rev. 18 4 Ishak et al., 2011

Abbreviations: Fwd., forward; qPCR, quantitative PCR; Rev., reverse; rRNA, ribosomal RNA.

Use: (1) amplification and sequencing of host genes, (2) cloning/sequencing of Coriobacteriaceae symbionts, (3) qPCR and (4) 454 sequencing.