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. 2015 Sep 11;10(3):707–720. doi: 10.1038/ismej.2015.148

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Copyright © 2016 International Society for Microbial Ecology

This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International License. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-nd/4.0/

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Participants enriched in E. cloacae complex after antibiotic exposure were clustered together before exposure. MFA was performed on day 0 samples only. Clustered participants enriched in the E. cloacae complex at E7 (Cluster 2) are represented in grey with the remainder of the samples presented in black.