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. 2016 Apr;26(4):510–518. doi: 10.1101/gr.198135.115

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© 2016 Lovell et al.; Published by Cold Spring Harbor Laboratory Press

This article is distributed exclusively by Cold Spring Harbor Laboratory Press for the first six months after the full-issue publication date (see http://genome.cshlp.org/site/misc/terms.xhtml). After six months, it is available under a Creative Commons License (Attribution-NonCommercial 4.0 International), as described at http://creativecommons.org/licenses/by-nc/4.0/.

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Figure 2. — Distribution of differential expression of total counts between HAL2 and FIL2 parents in drought and recovery treatments. Log₂ fold changes (LFC) between HAL2 and FIL2 were calculated for all genes independently in each experimental treatment. (A) All genes with significant genotype effects are presented. (B) Only those genes with significant G×E effects are presented; those G×E genes with log₂ fold changes greater than 5 or less than −5 are shrunk to 5 (−5) for plotting purposes. In each panel, genes were binned by the direction and significance of the LFC. The numbers of genes belonging to each bin are displayed as horizontal bar plots at the top of each panel.