Table 1.
Ten sequence variants that are compatible with recessive inheritance
| Chr | Position (bp) | NCBI reference ID | Type | Ref | Alt | Affected gene | Effect |
|---|---|---|---|---|---|---|---|
| 3 | 15,079,217 | rs723240647 | Indel | C | – | GON4L | p.E1430Kfs66 |
| 3 | 15,713,943* | rs524337907 | SNP | G | C | – | – |
| 3 | 15,713,959* | rs719431247 | SNP | G | A | – | – |
| 3 | 15,737,755* | rs723848297 | SNP | C | T | – | – |
| 3 | 15,737,992* | ss1457237026 | Indel | T | – | – | – |
| 3 | 15,738,245* | rs720131431 | Indel | C | – | – | – |
| 3 | 15,815,016* | rs723370534 | SNP | G | A | KCNN3 | Intronic |
| 3 | 15,924,914* | rs717718209 | SNP | G | A | KCNN3 | Intronic |
| 3 | 16,046,490* | rs720952332 | SNP | T | C | ADAR | Intronic |
| 3 | 16,131,785 | rs715250609 | SNP | T | C | TDRD10 | Intronic |
The chromosomal position (base pairs) of compatible variants was based on the UMD3.1 assembly of the bovine genome. The asterisks indicate eight variants that are polymorphic among 1005 animals from 28 breeds other than Fleckvieh that had been sequenced for the 1000 bull genomes project
Ref reference allele, Alt alternate allele