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. 2016 Apr 1;58:14. doi: 10.1186/s40781-016-0095-3

Table 3.

Unbiased expected heterozygosity (he), observed heterozygosity (ho) and Hardy-Weinberg Equilibrium (HWE) p-values for SNPs in the PPARG, CEBPA and RXRA genes in an Argentinean crossbred population (Angus-Hereford-Limousin). A: purebred Angus; H. purebred Hereford; ¾A: 75 % Angus steers; ¾ H: 75 % Hereford steers; ½AH: 50 % Angus -50 % Hereford steers; LX: Limousine crossbred steers

SNP Population
A H ¾A ¾ H
he ho HWE p value he ho HWE p-value he ho HWE p-value he ho HWE p-value
rs41610552 (PPARG) 0.44 0.50 0.49 0.30 0.36 0.56 0.36 0.33 0.63 0.22 0.25 1.00
rs207671117 (PPARG) 0.09 0.09 1.00 0.00 0.00 - 0.00 0.00 - 0.04 0.04 -
rs42016945 (PPARG) 0.44 0.41 0.73 0.34 0.42 0.55 0.44 0.30 0.10 0.31 0.29 1.00
rs210446561 (CEBPA) 0.38 0.50 0.15 0.20 0.21 1.00 0.22 0.25 1.00 0.25 0.29 1.00
rs207774429 (RXRA) 0.41 0.39 1.00 0.47 0.69 0.09 0.47 0.56 0.59 0.48 0.71 0.09
rs133517803 (RXRA) 0.44 0.37 0.31 0.11 0.12 1.00 0.45 0.67 0.01* 0.34 0.42 0.54
rs136289117 (RXRA) 0.02 0.02 - 0.04 0.04 - - - - - - -
rs209839910 (RXRA) 0.05 0.05 1.00 0.04 0.04 - 0.00 0.00 - 0.08 0.08 1.00
½AH LX Global
he ho HWE p-value he ho HWE p-value he ho HWE p-value
rs41610552 (PPARG) 0.36 0.42 0.14 0.49 0.55 0.51 0.38 0.42 0.72
rs207671117 (PPARG) 0.06 0.06 1.00 0.12 0.12 1.00 0.06 0.06 1.00
rs42016945 (PPARG) 0.37 0.32 0.17 0.45 0.29 0.03* 0.40 0.33 0.16
rs210446561 (CEBPA) 0.19 0.21 1.00 0.16 0.17 1.00 0.24 0.28 0.99
rs207774429 (RXRA) 0.43 0.59 <0.01* 0.43 0.44 1.00 0.43 0.56 <0.01*
rs133517803 (RXRA) 0.36 0.38 0.77 0.50 0.60 0.33 0.40 0.42 0.34
rs136289117 (RXRA) - - - - - - 0.01 0.01 1.00
rs209839910 (RXRA) 0.03 0.03 1.00 0.08 0.08 1.00 0.04 0.04 1.00

*Significant deviations from the theoretical proportions (P < 0.05)