Table 5.
Mapping statistics for different experimental replicates
| Technology | MiSeq 250X2 | MiSeq 250X2 | MiSeq 250X2 | MiSeq 250X2 |
|---|---|---|---|---|
| Sample | N2 L1 Fed AvaII | N2 L1 Fed DpnII | N2 L1 Starved AvaII | N2 L1 Starved DpnII |
| GEO accession | GSM2041035- SRR3105469 | GSM2041036- SRR3105471 | GSM2041033 - SRR3105465 | GSM2041034- SRR3105467 |
| Total number of reads | 5,058,249 | 4,682,335 | 6,887,612 | 3,716,627 |
| Both sides aligned | 2,438,224 | 1,576,630 | 3,552,524 | 1,987,126 |
| Concordant Pairs | 1,928,195 | 1,094,704 | 2,506,096 | 1,159,604 |
| intra-chromosomal Pairs | 323,168 | 278,034 | 677,872 | 583,798 |
| inter-chromosomal Pairs | 143,311 | 193,579 | 210,296 | 222,675 |
| Hi-C valid pairs | 466,479 | 471,613 | 888,168 | 806,473 |
| % Hi-C valid pairs | 19.1 | 30 | 25 | 40.6 |