uORF translation is correlated with CDS repression. Scatterplot displays the per‐sample mean repression of uORF‐containing transcripts versus the mean translation efficiency of uORFs in single‐uORF transcripts. Repression is determined by calculating the difference between the mean TE of CDSs in uORF‐containing transcripts versus the mean TE of CDSs in transcripts lacking uORFs/oORFs in their TLS. Only expressed transcripts (> 0.5 RNA RPKM across samples per organism) were counted. Labels indicate the sample name. For more information on individual samples, see
Table EV3.