Table 1.

Summary of sequencing datasets

Acc.	Plat	Vial	Lib.	Reads	Length (bp)	Insert (bp)	Cov.
SRR1979039	miseq	0	1	3305082	230	257	247
SRR1979040	miseq	0	2	3732088	216	233	263
SRR1979041	miseq	1	1	3973320	218	242	279
SRR1979042	miseq	1	2	3941040	223	247	285
SRR1979043	miseq	2	1	3442554	234	268	261
SRR1979070	miseq	2	2	3226726	232	268	240
SRR1979044	miseq	3	1	3025028	233	264	229
SRR1979045	miseq	3	2	4796382	200	210	303
SRR1979046	miseq	4	1	3338456	239	278	260
SRR1979047	miseq	4	2	2995090	237	277	231
SRR1979048	miseq	5	1	3495384	225	255	255
SRR1979049	miseq	5	2	3116128	241	281	244
SRR1979050	miseq	6	1	3129282	237	271	240
SRR1979060	miseq	6	2	2976312	242	280	233
SRR1979064	miseq	7	1	2630544	241	283	204
SRR1979065	miseq	7	2	3416580	225	248	247
SRR2002412	pgm	0	1	556903	231		42
SRR2002413	pgm	1	1	530117	224		38
SRR2002414	pgm	2	1	437527	231		33
SRR2002415	pgm	3	1	552692	232		42
SRR2002416	pgm	4	1	498479	232		37
SRR2002418	pgm	5	1	390070	235		30
SRR2002419	pgm	6	1	426196	232		32
SRR2002420	pgm	7	1	439119	238		34
SRR2056302	pacbio	9	1	163475	10510		108
SRR2056306	pacbio	9	2	163471	10436		103
SRR2056310	pacbio	9	3	163474	9863		91

Acc. - Sequence read archive (SRA) database accessions. Plat. - sequencing platform, miseq: Illumina MiSeq, pgm: Ion Torrent PGM, pacbio: Pacific Biosciences RSII. Lib. - library replicate number for miseq and pgm, smartcell replicate for pacbio. Reads - number of sequencing reads in the dataset. Length - median read length in base pairs. Insert - median insert size in base pairs for paired-end reads. Cov. - median sequence coverage across the genome