Table 3.
Pairwise variant analysis results
| Position | Proportion of Pairs | Median Frequency | Minimum P-value | N Significant |
|---|---|---|---|---|
| 244332 | 0.01 | 21.31 | 0.51 | 0.00 |
| 2615986 | 0.03 | 20.48 | 0.45 | 0.00 |
| 2616058 | 0.08 | 25.29 | 0.15 | 0.00 |
| 2619808 | 0.01 | 20.78 | 0.61 | 0.00 |
| 2619886 | 0.01 | 21.54 | 0.50 | 0.00 |
Position is the position in the genome where differences in variant frequency for at least one of the 16 pairwise comparisons were reported. Proportion of pairs is the fraction of the pairwise comparisons between the 16 Illumina MiSeq datasets where VarScan reported a difference in variant frequency. Median frequency is the median variant frequency for datasets with reported difference at that genome position. Minimum p-value is the lowest p-value reported by VarScan for all pairwise dataset comparisons with reported differences in variant frequency. N Significant is the number of datasets with reported statistically significant differences at that genome position