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. 2016 Apr 5;7:441. doi: 10.3389/fpls.2016.00441

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Copyright © 2016 Jin, Huang, Li, Yin, Li, Yao and Zhang.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Phylogenetic tree construction and motif analysis of the conserved bHLH domain. (A) Phylogenetic tree containing PubHLH1 and Arabidopsis bHLHs. PubHLH1 is marked with a red circle. (B) Motif analysis of bHLH domains from PubHLH1 and those of Arabidopsis thaliana (AtICE1: AT3G26744; AtICE2: AT1G12860), Glycine max (GmICE1: ACJ39211; GmICE2: ACJ39212; GmICE3: ACJ39213; GmICE4: ACJ39214), Malus × domestica (MdICE1: ABS50251), Oryza sativa (OsICE1: NP_001045272), Populus suaveolens (PsICE1: ABF48720; PsICE2: ADK91821), Solanum lycopersicum (SlICE1: AGG38826), and Vitis vinifera (VvICE1: AFI49627) were performed on MEME. The basic region (15 amino acids) is shown as an open box, and helix-loop-helix domain is shown by bold lines linked by a loop. The broken line indicates the zipper region following the bHLH domain.