Table 2.
40 most abundant proteins found in GMMA (by average % mass in Sf2a and Ss GMMA).
| Gene name | Location | Protein name | Uniprot name | Average % mass in GMMA | % mass in Sf2a GMMA | % mass in Ss GMMA |
|---|---|---|---|---|---|---|
| SF2457T_0298 | OM | Outer membrane protein C | E3XX60_SHIFL | 13.411 | 14.619 | 12.203 |
| SF2457T_0799 | OM | Outer membrane protein A | E3XYK2_SHIFL | 11.943 | 10.615 | 13.271 |
| SS53G_3941 | OM | Outer membrane protein X | E9UMG3_SHISO | 8.506 | 11.829 | 5.183 |
| SS53G_0415 | OM lipo | Repeated sequence found in lipoLPP family prot. | E7JU63_SHISO | 7.261 | 9.955 | 4.566 |
| SF2457T_4977 | PP | Protease Do (HtrA) | E3YA49_SHIFL | 4.604 | 7.366 | 1.842 |
| SS53G_2965 | OM lipo | Entericidin B | E7K193_SHISO | 4.257 | 0.101 | 8.413 |
| SS53G_0370 | OM lipo | Outer membrane lipoprotein pcp | E7JU20_SHISO | 3.528 | 4.570 | 2.485 |
| tolB | PP | Protein tolB | TOLB_SHISS | 2.859 | 2.637 | 3.080 |
| SS53G_0760 | OM | Outer membrane porin protein LC | E7JV54_SHISO | 2.419 | 0.479 | 4.358 |
| SF2457T_3748 | OM | Outer membrane protein | E3Y6Q5_SHIFL | 2.145 | 2.654 | 1.636 |
| yaeT | OM | Outer membrane protein assembly factor yaeT | YAET_SHISS | 1.646 | 2.258 | 1.035 |
| lpoA | OM lipo | Penicillin-binding protein activator LpoA | LPOA_SHIF8 | 1.595 | 1.679 | 1.510 |
| SF2457T_0832 | OM | Outer membrane protein F | E3XYN5_SHIFL | 1.471 | 1.036 | 1.905 |
| SGF_01778 | OM lipo | Glycoprotein-polysaccharide metabolism | E7TB57_SHIFL | 1.465 | 0.280 | 2.650 |
| SS53G_1454 | OM lipo | Osmotically inducible lipoprotein B | E7JX36_SHISO | 1.256 | 1.692 | 0.820 |
| lamB | OM | Maltoporin | LAMB_SHISS | 1.156 | 0 | 2.312 |
| slp | OM lipo | OM protein induced after carbon starvation | Q3YWI0_SHISS | 1.151 | 0.014 | 2.288 |
| SGF_00427 | OM | Aerobactin siderophore receptor IutA | E7T7F9_SHIFL | 0.977 | 1.486 | 0.468 |
| SF2457T_4357 | PP | Peptidyl-prolyl cis-trans isomerase | E3Y8E7_SHIFL | 0.932 | 0.968 | 0.896 |
| pal | OM lipo | Peptidoglycan-associated lipoprotein | E7K8X6_SHISO | 0.873 | 0.930 | 0.816 |
| SS53G_1748 | PP | Putative uncharacterized protein | E7JXX8_SHISO | 0.869 | 1.080 | 0.658 |
| SS53G_0544 | OM lipo | SmpA/OmlA family protein | E7JUJ2_SHISO | 0.829 | 0.170 | 1.489 |
| yajG | Unknown | Putative polymerase/proteinase | Q3Z4W9_SHISS | 0.808 | 1.276 | 0.340 |
| SF2457T_2094 | PP | Periplasmic oligopeptide-binding protein | E3Y260_SHIFL | 0.769 | 1.065 | 0.473 |
| SF2457T_2279 | CytoM | Tail-specific protease | E3Y2N8_SHIFL | 0.679 | 1.152 | 0.206 |
| surA | PP | Chaperone surA | SURA_SHISS | 0.623 | 0.787 | 0.458 |
| SF2457T_0435 | OM | Long-chain fatty acid outer membrane transporter | E3XXF4_SHIFL | 0.622 | 0.062 | 1.181 |
| SS53G_1935 | OM lipo | SmpA/OmlA family protein | E7JYG3_SHISO | 0.611 | 0.858 | 0.364 |
| degQ | PP | Serine endoprotease | Q3YX14_SHISS | 0.592 | 0.053 | 1.132 |
| SS53G_3947 | PP | Putative uncharacterized protein | E9UMG9_SHISO | 0.540 | 0.816 | 0.265 |
| SF2457T_3200 | OM lipo | Pectinesterase B | E3Y553_SHIFL | 0.532 | 0.651 | 0.414 |
| SF2457T_3582 | OM lipo | Peptidase family M48 family protein | E3Y5Y2_SHIFL | 0.530 | 0.555 | 0.504 |
| livJ | PP | High-affinity amino acid transport system | Q3YW68_SHISS | 0.521 | 0.264 | 0.777 |
| yeaF | OM | Putative uncharacterized protein yeaF | Q3Z2C1_SHISS | 0.507 | 0.479 | 0.535 |
| SS53G_4569 | OM lipo | Putative phospholipid-binding domain protein | E7K576_SHISO | 0.468 | 0.535 | 0.401 |
| SF2457T_4988 | OM | Ferrichrome-iron receptor | E3YA60_SHIFL | 0.435 | 0.816 | 0.053 |
| SF2457T_4129 | PP | PP dipeptide transport protein | E3Y7S0_SHIFL | 0.434 | 0.401 | 0.467 |
| ybjP | OM lipo | Putative enzyme | Q0T8Q3_SHIF8 | 0.414 | 0.429 | 0.400 |
| SF2457T_3629 | OM | Serine protease eatA | E3Y628_SHIFL | 0.410 | 0.115 | 0.705 |
| yfgL | OM-Lipo | Outer membrane assembly lipoprotein YfgL | E7JUN3_SHISO | 0.409 | 0.571 | 0.246 |