Table 3.
Proteins preferentially found in Ss GMMA.
| Gene name | Location | Protein name | Uniprot name | % mass in Ss GMMA | Ratio | Theoretically present in Sf2a* |
|---|---|---|---|---|---|---|
| Predicted outer membrane and periplasmic localized proteins with at least 0.01% mass in Ss GMMA not found in Sf2a GMMA | ||||||
| SS53G_2461 | PP | Maltose-binding periplasmic protein | E7JZV4_SHISO | 0.799 | −** | + |
| SS53G_0290 | OM lipo | TonB-dependent Receptor Plug domain protein | E7JTU0_SHISO | 0.732 | − | − |
| SS53G_3463 | OM | Iron(III) dicitrate transport protein fecA | E7K2N5_SHISO | 0.589 | − | − |
| cirA | OM | OM receptor for iron-regulated colicin I receptor | Q3Z051_SHISS | 0.430 | − | − |
| exc | OM lipo | Entry exclusion protein 2 | A4SH43_SHISS | 0.423 | − | − |
| SS53G_3761 | OM | Ferrichrome-iron receptor | E7K3K6_SHISO | 0.396 | − | − |
| SS53G_2464 | PP | Maltose operon periplasmic protein | E7JZV7_SHISO | 0.337 | − | + |
| ycdO | PP | UPF0409 protein ycdO | YCDO_SHISS | 0.276 | − | + |
| SS53G_0127 | OM | Putative tonB-dependent receptor yncD | E7JTC8_SHISO | 0.159 | − | − |
| hdeA | PP | Putative uncharacterized protein hdeA | Q3YWI4_SHISS | 0.140 | − | + |
| mdoG | PP | Glucans biosynthesis protein G | OPGG_SHISS | 0.106 | − | + |
| SS53G_2146 | PP | Putative uncharacterized protein | E7JZ10_SHISO | 0.064 | − | − |
| SS53G_0128 | PP | PQQ enzyme repeat family protein | E7JTC9_SHISO | 0.058 | − | − |
| SS53G_5268 | OM | TonB-dependent Receptor Plug domain protein | E7K7A5_SHISO | 0.053 | − | + |
| SS53G_2796 | OM lipo | Inner membrane lipoprotein yiaD | E7K0S5_SHISO | 0.051 | − | + |
| SSON_1625 | PP | Putative sulfatase | Q3Z1P2_SHISS | 0.047 | − | − |
| SS53G_0368 | OM lipo | Putative uncharacterized protein | E7JU18_SHISO | 0.036 | − | − |
| SS53G_4157 | PP | Putative uncharacterized protein | E7K461_SHISO | 0.032 | − | + |
| yehZ | PP | Putative transport system permease protein | Q3Z073_SHISS | 0.026 | − | + |
| SS53G_4973 | PP | Acid-resistance protein | E7K6I7_SHISO | 0.025 | − | + |
| SS53G_0106 | PP | Bacterial extracellular solute-binding family protein | E7JTA7_SHISO | 0.024 | − | − |
| SSON_1637 | PP | Putative hemin-binding lipoprotein | Q3Z1N0_SHISS | 0.022 | − | − |
| tauA | PP | Taurine transport system periplasmic protein | Q3Z543_SHISS | 0.019 | − | − |
| SS53G_3203 | OM lipo | Putative uncharacterized protein | E7K1X5_SHISO | 0.015 | − | + |
| Predicted outer membrane and periplasmic localized proteins highly enriched in Ss GMMA compared to Sf2a GMMA*** | ||||||
| lamB | OM | Maltoporin | LAMB_SHISS | 2.312 | 6017 | |
| slp | OM lipo | Outer membrane protein induced after carbon starvation | Q3YWI0_SHISS | 2.288 | 163 | |
| glpQ | PP | Glycerophosphodiester phosphodiesterase, periplasmic | Q3YZW7_SHISS | 0.609 | 193 | |
| SS53G_4155 | OM lipo | Putative polysaccharide export protein gfcE | E7K459_SHISO | 0.313 | 170 | |
| SS53G_3546 | PP | Putative phospholipid-binding domain protein | E7K2W6_SHISO | 0.249 | 321 | |
| SS53G_4156 | OM | Putative uncharacterized protein | E7K460_SHISO | 0.216 | 239 | |
| SS53G_5756 | PP | Glutamate/aspartate periplasmic-binding protein | E7K8P1_SHISO | 0.105 | 230 | |
| ycdB | PP | Peroxidase ycdB (Deferrochelatase/peroxidase EfeB) | YCDB_SHISS | 0.091 | 246 | |
| ymcC | OM lipo | Putative regulator | Q3Z3D5_SHISS | 0.052 | 376 | |
| blc | OM lipo | Outer membrane lipoprotein | Q3YUI9_SHISS | 0.051 | 329 | |
*
Present if protein sequence with ≥90% coverage and ≥95% identity was identified in Sf2a proteome or translated genome.
**
Protein not detected in Sf2a GMMA.
***
Proteins >0.01% total protein mass and with at least 100× higher % mass in Ss GMMA than Sf2a GMMA.