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. 2016 Mar 14;6(4):358–368. doi: 10.1002/2211-5463.12047

Table 1.

Primers used in RT‐PCR and/or qRT‐PCR experiments

Gene product name (gene name) IDa Primer sequences (5′‐3′) Amplicon length (bp) Amplicon spliced (bp) Intron analyzed Experiments
Asparagine synthetase 2 (asn‐2) NCU04303
F: ATCCGTCACCGTGGTCCTGAT 188 49 Intron 3 RT‐PCR
R: TGTTGTGGCAAGTGACGCTGC
F: CAACCTTTCGCCCAACC 63 Intron 3 qRT‐PCR
R: TTGACTCGATTGACACTTTTAT
F: GCGGCAGCGTCACTTG 142 57 Intron 4 RT‐PCR
R: CCGACGATACTGAGACGCT
F: TGCGGATAAGACGATGGTTG 182 112 Intron 5 RT‐PCR
R: TGCCAAGCGTCTTGTTTCTA
C6‐zinc finger (fluffy) NCU08726
F: GCCAAGACAACACCTAACACCGAA 299 149 Intron 1 RT‐PCR
R: AGATGGTCCTTGGTACGCCATTTC
CaaX farnesyltransferase beta subunit Ram1 (ram‐1) NCU05999
F: CAACCCAACAACGAGGCCCATGGC 503 313 Intron 3 RT‐PCR
R: CGACTATAGAGACTCTCCGGCGCA
Actin NCU04173
F: GTATGTGCAAGGCCGGTTTCG 305 109 Introns 3/4 RT‐PCR
qRT‐PCR
R: TCCTTCTGGCCCATACCGATCATG
Tubulin alpha‐1 NCU09132
F: CCTCGTCTTCCACTCCTTCGG 445 190 Intron 4 RT‐PCR
qRT‐PCR
R: ACTGTGTTCGAGGGTGCTGTG
a

Gene accession number at the N. crassa genome database at the Broad Institute.