Skip to main content
. 2016 Mar 10;7(3):e152. doi: 10.1038/ctg.2016.11

Table 4. Logistic models and related PCA results.

  Intercept Colon
  Intercept Rectal
    Comp. 1a Comp. 2 Comp. 3     Comp. 1a Comp. 3 Comp. 4
Logistic model                  
 Est. coefficient 1.19 −1.40 −1.09 −1.95  Est. coefficient 3.07 −2.90 −1.32 0.95
 S.e. 0.46 0.27 0.28 0.48  S.e. 0.83 0.54 0.46 0.43
P-value 0.01 <0.001 <0.001 <0.001  P-value <0.001 <0.001 <0.01 0.03
           
Corresponding PCA resultsb          
 % of sample var.   38.24 24.86 13.30  % of Sample var.   44.66 8.67 6.56
                   
Included miRNA   Loadings
Included miRNA   Loadings
Hsa-miR-663b   −0.08 −0.07 −0.62 Hsa-miR-663b   −0.23 −0.36 −0.30
Hsa-miR-4539   0.26 0.25 −0.23 Hsa-miR-17-5p   −0.31 −0.08 0.07
Hsa-miR-17-5p   −0.38 0.09 −0.09 Hsa-miR-4323   0.24 −0.40 0.30
Hsa-miR-20a-5p   −0.37 0.10 −0.08 Hsa-miR-20a-5p   −0.30 −0.08 0.10
Hsa-miR-663a   0.04 0.01 −0.62 Hsa-miR-378a-3p   0.20 −0.12 −0.39
Hsa-miR-4538   0.26 0.26 −0.16 Hsa-miR-93-5p   −0.30 −0.04 −0.01
Hsa-miR-21-5p   −0.33 0.14 0.00 Hsa-miR-4539   0.28 −0.30 −0.01
Hsa-miR-215   −0.08 0.42 0.18 Hsa-miR-378i   0.19 −0.12 −0.39
Hsa-miR-4506   −0.20 −0.22 0.04 Hsa-miR-21-5p   −0.26 0.12 0.35
Hsa-miR-92a-3p   −0.33 0.13 −0.12 Hsa-miR-92a-3p   −0.29 −0.12 0.13
Hsa-miR-93-5p   −0.36 0.11 −0.02 Hsa-miR-145-5p   0.10 0.29 0.07
Hsa-miR-192-5p   −0.10 0.42 0.17 Hsa-miR-150-5p   0.15 0.21 −0.14
Hsa-miR-145-5p   −0.02 0.26 0.18 Hsa-miR-3651   −0.26 −0.15 0.09
Hsa-miR-3651   −0.33 0.11 −0.12 Hsa-miR-4749-3p   0.25 −0.30 0.31
Hsa-miR-378a-3p   0.17 0.41 −0.08 Hsa-miR-4506   −0.24 0.27 −0.39
Hsa-miR-378i   0.17 0.39 −0.09 Hsa-miR-424-3p   −0.24 −0.22 −0.05
  Hsa-miR-6073   0.15 0.42 0.27

AIC, Akaike information criterion; miRNA, microRNA; PCA, principal component analysis.

a

The components listed are those included in the model; model selection was based on AIC statistics.

b

Loadings and % of sample variance refer to the component listed in the corresponding column.