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. 2016 Apr 6;6:24067. doi: 10.1038/srep24067

Table 1. Titration methods used for Next Generation Sequencing.

Library Titration Method Requires Bio-analyzer analysis Quantification Method Sensitivity DNA Input per Lane
QuBit yes Estimation through Average Library Molecular Size pg-ng 8 pM
PicoGreen yes Estimation through Average Library Molecular Size pg-ng 8 pM
qPCR yes Estimation through Average Library Molecular Size 0.1-1 pg 8 pM
ddPCR no Count of number of molecules per microliter fM 8 pM

NGS consists of massive parallel sequencing of libraries from shRNA screen to ChIPseq, Exome -, Whole-genome sequencing and chromatin capture such as HiC and 4C. This table reports the most common methods for titration, including dsDNA quantification by spectrofluoremetry (QuBit, PicoGreen); real-time PCRs (qPCR, KapaBiosystems); and finally ddPCR (BioRad). Using the advantages of an emulsion PCR approach, ddPCR-based titration, unlike the others does not require a high sensitivity electrophoresis analysis (BioAnalyzer, Agilent) in order to determine the average molecular size of the library for calculation of molarity. After accurate quantification, 8 pM–12 pM of DNA is loaded per lane in the deep sequencer (Illumina’s Recommendations).