Table 1. Titration methods used for Next Generation Sequencing.
Library Titration Method | Requires Bio-analyzer analysis | Quantification Method | Sensitivity | DNA Input per Lane |
---|---|---|---|---|
QuBit | yes | Estimation through Average Library Molecular Size | pg-ng | 8 pM |
PicoGreen | yes | Estimation through Average Library Molecular Size | pg-ng | 8 pM |
qPCR | yes | Estimation through Average Library Molecular Size | 0.1-1 pg | 8 pM |
ddPCR | no | Count of number of molecules per microliter | fM | 8 pM |
NGS consists of massive parallel sequencing of libraries from shRNA screen to ChIPseq, Exome -, Whole-genome sequencing and chromatin capture such as HiC and 4C. This table reports the most common methods for titration, including dsDNA quantification by spectrofluoremetry (QuBit, PicoGreen); real-time PCRs (qPCR, KapaBiosystems); and finally ddPCR (BioRad). Using the advantages of an emulsion PCR approach, ddPCR-based titration, unlike the others does not require a high sensitivity electrophoresis analysis (BioAnalyzer, Agilent) in order to determine the average molecular size of the library for calculation of molarity. After accurate quantification, 8 pM–12 pM of DNA is loaded per lane in the deep sequencer (Illumina’s Recommendations).