Table 6.

List of significantly DMRs located by Bumphunter

Chr Number	Start Position	End Position	CpG Context	Gene Symbol	Δ Methylation	FDR
Chr 17	46641476	46642110	CpGI	HOXB3	54.881204	0.0032
Chr 17	46647727	46648208	Open Sea	HOXB3	53.093463	0.0088
Chr 20	22562221	22563809	CpGI	FOXA2	−49.289813	0.0104
Chr 17	46671413	46672379	CpGIShore	HOXB5/HOXB6	50.047402	0.0128
Chr 17	46629027	46629972	CpGIShore	HOXB3	49.601861	0.0184
Chr 10	94455582	94456148	CpGI	HHEX	42.943158	0.0208
Chr 12	54428314	54428935	CpGI	HOXC4	−47.370940	0.0208
Chr 17	46669476	46670126	CpGI	HOXB5	45.448684	0.0208
Chr 12	54424612	54425447	CpGI	HOXC4	−42.839777	0.0259
Chr 17	46618510	46619969	CpGIShore	HOXB2	38.690672	0.0292
Chr 8	99961123	99962167	CpGIShelf	OSR2	−45.342486	0.0424

Benjamini-Hochberg adjusted P value cut-off of 0.05.

DMR, differentially methylated region; Chr, chromosome; CpGI, CpG island; CpGIShore, <2 kb from CpG Island; CpGIShelf, <4 kb from CpG Island; Open Sea, >4kb from CpG Island.