Table 7.
Δ Methylation of specific CpG sites (n = 17) mapping to HOXB and HOXC genes assessed in both the HELP-tagging assay and EpiTYPER MassArray
| DMS | Δ Methylation (HELP) | FDR | Δ Methylation (EpiTYPER) | FDR |
|---|---|---|---|---|
| chr12-54423547 | −65.076 | 0.00059452 | −76.0 | 9.91E-09 |
| chr12-54424689 | −56.983 | 0.01946927 | −53.4 | 1.87E-06 |
| chr12-54428544 | −55.726 | 0.000536599 | −50.6 | 6.23E-07 |
| chr12-54428644 | −71.916 | 0.001873619 | −70.2 | 7.77E-09 |
| chr17-46629480 | 67.253 | 0.003352509 | 25.4 | 0.00383449 |
| chr17-46639805 | 46.71816 | 0.046413584 | 35.8 | 0.000730088 |
| chr17-46641555 | 78.9683 | 0.019383318 | 26.4 | 0.002913226 |
| chr17-46641618 | 79.24532 | 0.040733787 | 31.8 | 0.001595676 |
| chr17-46654129 | 82.07232 | 0.012281356 | 68.4 | 1.04E-07 |
| chr17-46660594 | 41.57789491 | 0.0325717925 | 63.4 | 2.08E-06 |
| chr17-46671931 | 76.75316 | 0.005873741 | 62.2 | 4.52E-06 |
| chr17-46673605 | 84.340 | 0.036240058 | 68.4 | 1.04E-07 |
| chr17-46674011 | 86.86708 | 0.000403693 | 65.0 | 5.10E-08 |
| chr17-46683048 | 62.816 | 0.005873741 | 74.2 | 5.91E-08 |
| chr17-46683559 | 92.47932 | 6.64E-07 | 73.8 | 2.68E-06 |
| chr17-46683607 | 81.83062 | 0.002597815 | 75.0 | 7.14E-06 |
| chr17-46683644 | 86.18336 | 6.80E-06 | 74.0 | 6.08E-06 |
Benjamini-Hochberg adjusted P value cut-off of 0.05.