Table II. The number of mapped R. solani peptides, identified proteins, and estimation of the peptide FDR.
| Protein location | Condition | Time point | Annotated proteins |
Six frame translation of genome sequence |
|||||
|---|---|---|---|---|---|---|---|---|---|
| Mapped peptides | Identified proteins | Protein FDR | Mapped peptides | Identified proteins | Protein FDR | ||||
| PDC5A | Soluble mycelium | Vegetative growth | 3 dpi | 2977 | 260 | 0.4% | 1437 | 170 | 0.0% |
| PDC5B | Soluble mycelium | Vegetative growth | 7 dpi | 3471 | 317 | 0.3% | 1712 | 218 | 0.0% |
| PDC5C | Soluble mycelium | Infection | 3 dpi | 1539 | 150 | 0.7% | 1023 | 103 | 0.0% |
| PDC5D | Soluble mycelium | Infection | 7 dpi | 1682 | 199 | 0.0% | 1013 | 131 | 0.0% |
| PDC6B | culture filtrate | Vegetative growth | 7 dpi | 6008 | 143 | 0.0% | 2950 | 79 | 0.0% |
| PDC6C | culture filtrate | Infection | 3 dpi | 2692 | 69 | 0.0% | 1026 | 47 | 0.0% |
| PDC5E | culture filtrate | Infection | 7 dpi | 2059 | 113 | 0.9% | 1379 | 61 | 0.0% |
| PDC5F | Membrane | Vegetative growth | 3 dpi | 8020 | 751 | 0.3% | 4154 | 574 | 0.0% |
| PDC6E | Membrane | Vegetative growth | 7 dpi | 10273 | 869 | 0.1% | 5318 | 832 | 0.0% |
| PDC5G | Membrane | Infection | 3 dpi | 7492 | 676 | 0.0% | 3943 | 532 | 0.0% |
| PDC6F | Membrane | Infection | 7 dpi | 7467 | 637 | 0.0% | 4144 | 559 | 0.0% |
| All samples | 60630 | 1350 | 1.00% | 31138 | 1310 | 0.00% | |||
| Non-redundant proteins after clustering | 2086 | ||||||||