Skip to main content
. 2016 Feb 11;170(4):2172–2186. doi: 10.1104/pp.15.01667

Table II. SRA studies analyzed with expVIP.

Study Identifier Summary Total Reads Mapped Reads and Percentage Reference
DRP000768 Phosphate starvation in roots and shoots 118,053,746 84,529,715 (72%) Oono et al. (2013)
ERP003465 Fusarium head blight-infected spikelets 1,827,362,091 1,357,197,955 (74%) Kugler et al. (2013)
ERP004505 Grain tissue-specific developmental time course 873,709,556 475,184,621 (54%) Pfeifer et al. (2014)
SRP004884 Flag leaf down-regulation of GPC 209,427,573 121,855,143 (58%) Cantu et al. (2011)
SRP013449 Grain tissue-specific developmental time course 132,702,451 82,417,257 (62%) Gillies et al. (2012)
SRP017303 Stripe rust-infected seedlings 33,361,836 13,732,210 (41%) Cantu et al. (2013)
SRP022869 Septoria tritici-infected seedlings 100,582,632 63,155,877 (63%) Yang et al. (2013)
SRP028357 Shoots and leaves of nullitetra group 1 and group 5 3,304,500,117 2,258,692,000 (68%) Leach et al. (2014)
SRP029372 Grain tissue-specific developmental time course 101,477,759 17,525,439 (17%) Li et al. (2013)
SRP038912 Comparison of stamen, pistil, and pistilloidy expression 217,315,378 153,009,134 (70%) Yang et al. (2015)
SRP041017 Stripe rust and powdery mildew infection time course 395,463,786 272,228,560 (69%) Zhang et al. (2014)
SRP041022 Developmental time course of synthetic hexaploid 134,641,113 84,583,556 (63%) Li et al. (2014)
ERP008767 Grain tissue-specific expression at 12 DPA 45,213,827 26,420,708 (58%) Pearce et al. (2015)
SRP045409 Drought and heat stress time course in seedlings 921,578,806 533,928,182 (58%) Liu et al. (2015)
ERP004714 Developmental time course of cv Chinese Spring 1,536,051,415 1,066,712,760 (69%) Choulet et al. (2014)
SRP056412 Grain developmental time course with the 4A dormancy quantitative trait locus 1,875,916,011 808,809,053 (43%) Barrero et al. (2015)