Figure 1.

Maximum likelihood phylogenetic analysis of proteins from GT47 (A), GT43 (B), and GT75 (C) families that were identified by proteomics (Table I). Wheat (Ta, in blue), Arabidopsis (At), and rice (Os) proteins are included for comparison. Trees were generated through the Phylogeny.fr platform using MUSCLE 3.7 (Edgar 2004) and PhyML 3.0 (Guindon et al., 2010) programs. Bootstrap values (based on 500 replicate) are indicated at the tree nodes. The scale measures evolutionary distance in substitution per amino acids. D, List of wheat proteins matched by the highest number of peptides and having the highest protein scores. Text in red indicates the amino acid sequences covered by the peptides. Protein coverage and the number of peptides matching each protein are indicated.