Table 3. The six secreted genes identified using PhyBi.
| Gene | Chr. | Length (aa) | SP | JGI ID | InterPro Description | InterPro ID | % Cys | Induced in Kellner et al. 2012 | Induced in Rudd et al. 2015 | SNP | dN | dS | Intron | Indel | % Pairwise Identity | % Identical Sites |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ZtRRes_00659 | 1 | 133 | 17 | NA | NA | NA | 0.9 | NA | NA | 19 | 3 | 7 | 9 | 0 | 98.7 | 96.4 |
| ZtRRes_01714 | 1 | 59 | 20 | 90262 | NA | NA | 2.6 | No | No | 3 | 2 | 1 | 0 | 0 | 99.5 | 98.5 |
| ZtRRes_05182 | 5 | 425 | 21 | 93433 | Major royal jelly | IPR017996 | 0.2 | Yes | Yes | 81 | 5 | 66 | 10 | 26 | 96.8 | 92.0 |
| ZtRRes_06114 | 7 | 177 | 19 | 94274 | Extracellular membrane protein, CFEM domain | IPR008427 | 6.3 | No, but highly expressed in all conditions | Highly expressed all days | 23 | 3 | 11 | 9 | 3 | 98.9 | 96.4 |
| ZtRRes_08426 | 10 | 676 | 21 | 96377 | NA | NA | 3.8 | No | No | 51 | 25 | 19 | 7 | 21 | 98.8 | 96.1 |
| ZtRRes_08778 | 11 | 443 | 16 | 111289 | NA | NA | 2.1 | No | No | 120 | 23 | 86 | 12 | 0 | 96.7 | 91.3 |
Chr., chromosome; SNP, single nucleotide polymorphism; NA, not applicable.