Table 1. The ABC transporter gene subfamilies in the common carp genome.
Gene name | Genomic length (bp) | CDS (na)a | CDS (aa)b | CDS status | Location |
---|---|---|---|---|---|
ABCA1a-1 | 12683 | 3138 | 1046 | partial | scaffold |
ABCA1a-2 | 20508 | 3120 | 1039 | partial | LG2 |
ABCA1b-1 | 12339 | 2946 | 982 | partial | LG28 |
ABCA1b-2 | 20132 | 4986 | 1661 | partial | LG28 |
ABCA2 | 15121 | 4734 | 1578 | partial | scaffold |
ABCA3b | 18382 | 2031 | 676 | partial | scaffold |
ABCA4a | 20517 | 2829 | 942 | partial | LG48 |
ABCA4b | 21288 | 3261 | 1087 | partial | scaffold |
ABCA5-1 | 13463 | 1503 | 500 | partial | LG33 |
ABCA5-2 | 20907 | 3318 | 1106 | partial | scaffold |
ABCA12 | 21966 | 3411 | 1137 | partial | LG11 |
ABCB4 | 27159 | 2520 | 839 | complete | LG32 |
ABCB5-1 | 20931 | 2274 | 757 | complete | LG32 |
ABCB5-2 | 27476 | 3279 | 1092 | complete | LG37 |
ABCB9 | 5885 | 798 | 265 | complete | LG45 |
ABCB11a | 28229 | 1362 | 453 | complete | LG41 |
ABCB11b | 30493 | 2547 | 848 | complete | scaffold |
ABCC1 | 10702 | 1665 | 555 | partial | scaffold |
ABCC2-1 | 26977 | 3168 | 1055 | complete | scaffold |
ABCC2-2 | 27106 | 3516 | 1171 | complete | scaffold |
ABCC4-1 | 33014 | 2699 | 1232 | partial | scaffold |
ABCC4-2 | 23070 | 2100 | 699 | complete | scaffold |
ABCC5-1 | 24438 | 3318 | 1106 | partial | LG36 |
ABCC5-2 | 17139 | 1860 | 620 | partial | scaffold |
ABCC6a | 22516 | 2865 | 954 | complete | scaffold |
ABCC6-2 | 20481 | 2853 | 950 | complete | LG5 |
ABCC6-3 | 21709 | 1935 | 644 | complete | LG47 |
ABCC7 | 61138 | 3855 | 1285 | partial | LG36 |
ABCC8 | 17975 | 1356 | 451 | partial | scaffold |
ABCC8-like | 16190 | 1980 | 660 | partial | LG9 |
ABCC9-1 | 30404 | 3096 | 1031 | complete | scaffold |
ABCC9-2 | 19447 | 2274 | 758 | partial | scaffold |
ABCC10 | 11264 | 3315 | 1105 | partial | LG21 |
ABCC12-1 | 9613 | 2550 | 850 | partial | LG14 |
ABCC12-2 | 20367 | 2052 | 683 | partial | LG13 |
ABCC13 | 28867 | 2493 | 830 | complete | scaffold |
ABCD1 | 23161 | 2616 | 871 | partial | scaffold |
ABCD2 | 22580 | 2055 | 684 | complete | LG32 |
ABCD3a-1 | 20678 | 2514 | 837 | complete | scaffold |
ABCD3a-2 | 20436 | 2841 | 946 | complete | scaffold |
ABCD3b | 20571 | 1845 | 614 | complete | scaffold |
ABCD4-1 | 22007 | 4767 | 1589 | partial | LG47 |
ABCD4-2 | 16733 | 3948 | 1315 | complete | scaffold |
ABCD4-like | 13237 | 2220 | 740 | partial | LG6 |
ABCE1-1 | 24420 | 1281 | 426 | complete | scaffold |
ABCE1-2 | 27484 | 1296 | 431 | complete | scaffold |
ABCF1-like | 25517 | 2952 | 983 | complete | scaffold |
ABCF2a | 21339 | 2280 | 760 | partial | scaffold |
ABCF2-2 | 21460 | 3183 | 1060 | partial | LG44 |
ABCF3 | 21366 | 1449 | 482 | partial | scaffold |
ABCG1 | 20586 | 1767 | 588 | complete | LG30 |
ABCG2-like | 30751 | 2709 | 902 | complete | LG49 |
ABCG2 | 14507 | 1170 | 389 | complete | LG45 |
ABCG2b | 5852 | 1041 | 346 | complete | scaffold |
ABCG2c | 10722 | 1542 | 513 | complete | scaffold |
ABCG2d | 8650 | 1335 | 444 | complete | scaffold |
ABCG4 | 26239 | 1947 | 648 | partial | LG10 |
ABCG4b | 25490 | 1791 | 596 | complete | scaffold |
ABCG5 | 9348 | 1191 | 396 | complete | scaffold |
ABCG8-1 | 23381 | 1704 | 567 | complete | scaffold |
ABCG8-2 | 5165 | 705 | 234 | partial | scaffold |
a Nucleic acid sequence.
b Amino acid sequence.