Table 1.
Differentially expressed genes (DEG) in the Δppk1 compared to the WT in the log and stationary phases. Genes with log2 fold change >1 .5 or <1 .5 with a p-value ≤0 .05 were considered significant. Genes of unknown functions and those that encode hypothetical proteins were not included in this table.
| Δppk1 DEG (Log phase) | Log2 fold | Proposed Function (Abbreviation) |
|---|---|---|
| CJJ81176_RS06440 | −2.58223 | Flagellin A (FlaA) |
| CJJ81176_RS02475 | −2.21966 | Molecular chaperone (ClpB) |
| CJJ81176_RS05980 | −2.06765 | Cobalamin ABC transporter permease |
| CJJ81176_RS03630 | −2.03358 | Molecular chaperone (DnaK) |
| CJJ81176_RS02650 | −1.89773 | Flagellar protein (FlaG) |
| CJJ81176_RS02655 | −1.71348 | Flagellar cap protein (FliD) |
| CJJ81176_RS05935 | −1.62294 | Molecular chaperone (GroEL) |
| CJJ81176_RS03625 | −1.52779 | Co-chaperone protein (GrpE) |
| CJJ81176_RS05905 | −4.55049 | Membrane protein |
| CJJ81176_RS05480 | −2.839 | Glucosyltransferase (PglI) |
| CJJ81176_RS06615 | −3.62449 | Toluene tolerance protein |
| CJJ81176_RS05825 | −2.58223 | 2-oxobutyrate oxidase |
| CJJ81176_RS00540 | 1.526291 | Chromosome partitioning protein (ParB) |
| CJJ81176_RS03800 | 1.718938 | 2-oxoglutarate:acceptor oxidoreductase |
| CJJ81176_RS05940 | 3.909622 | Sensor histidine kinase |
| DEG (Stationary phase) | ||
| CJJ81176_RS02690 | −2.89733 | C4-dicarboxylate ABC transporter |
| CJJ81176_RS03575 | −2.35115 | Adhesin |
| CJJ81176_RS03825 | −2.13977 | Signal transduction histidine kinase |
| CJJ81176_RS04095 | −2.02534 | Membrane protein |
| CJJ81176_RS03320 | −1.9993 | Flagellar L-ring protein (FlgH) |
| CJJ81176_RS03620 | −1.95134 | HrcA family transcriptional regulator |
| CJJ81176_RS03800 | −1.85067 | 2-oxoglutarate:acceptor oxidoreductase |
| CJJ81176_RS04090 | −1.8288 | Major Facilitator Superfamily (MFS) transporter |
| CJJ81176_RS04235 | −1.82852 | Flagellar hook-associated protein (FlgL) |
| CJJ81176_RS03370 | −1.77805 | Flagellar basal body rod protein (FlgG) |
| CJJ81176_RS01310 | −1.74863 | Tautomerase |
| CJJ81176_RS06535 | −1.69151 | Membrane protein |
| CJJ81176_RS03375 | −1.69103 | Flagellar basal body rod protein (FlgG) |
| CJJ81176_RS06110 | −1.67824 | Isomerase |
| CJJ81176_RS08145 | −1.64488 | 50S ribosomal protein L18 (RplR) |
| CJJ81176_RS06410 | −1.62838 | Flagellin modification protein (PseA) |
| CJJ81176_RS07355 | −1.59133 | ABC transporter permease |
| CJJ81176_RS08350 | −1.56166 | Flagellar hook protein (FlgE) |
| CJJ81176_RS04755 | −1.55111 | Major Facilitator Superfamily (MFS) transporter major |
| CJJ81176_RS03630 | −1.5464 | Molecular chaperone (DnaK) |
| CJJ81176_RS04260 | −1.52623 | Chemotaxis protein (CheY) |
| CJJ81176_RS03290 | −1.51055 | ABC transporter |
| CJJ81176_RS06305 | −1.50693 | UDP-N-acetylglucosamine 4,6-dehydratase |
| CJJ81176_RS01785 | −4.68234 | Colicin |
| CJJ81176_RS03100 | 1.573296 | peptide methionine sulfoxide reductase (MsrA) |
| CJJ81176_RS05130 | 1.577051 | Carbon-nitrogenhydrolase |
| CJJ81176_RS04670 | 1.632199 | Membrane protein insertion efficiency factor |
| CJJ81176_RS06600 | 1.636997 | Guanine permease |
| CJJ81176_RS05135 | 1.658186 | Exodeoxyribonuclease VII, small subunit |
| CJJ81176_RS01830 | 1.70258 | Sulfoxide reductase catalytic subunit (YedY) |
| CJJ81176_RS08155 | 1.795694 | 30S ribosomal protein S8 |
| CJJ81176_RS08295 | 1.866083 | 3-isopropylmalate dehydratase small subunit (LeuD) |
| CJJ81176_RS01905 | 1.911169 | Tram-like protein |
| CJJ81176_RS02320 | 2.158265 | Preprotein translocase subunit (SecE) |
| CJJ81176_RS02990 | 2.66359 | Phosphate ABC transporter substrate-binding protein (PstS) |
| CJJ81176_RS07070 | 3.117623 | Transformation system protein |