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. 2016 Apr 12;7:438. doi: 10.3389/fpls.2016.00438

Table 2.

Methylation-sensitive amplified polymorphism analysis of cytosine methylation patterns in the extracted B. napus.

EcoRI Digest (isoschizomer) lane
Methylation pattern in Subtype of methylation
HpaII MspI HpaII MspI B. napus Addition Lines
–▾ +▴ #CCGG GGCC CCGG GGCC B3
+ CCGG GGCC CCGG GGCC B4
+ + + CCGG GGCC CCGG GGCC B1
+ + + CCGG GGCC CCGG GGCC B2
+ + + CCGG GGCC CCGG GGCC A2
+ + + CCGG GGCC CCGG GGCC A1
+ CCGG GGCC CCGG GGCC A3
+ CCGG GGCC CCGG GGCC A4
+ + CCGG GGCC CCGG GGCC C1
+ + CCGG GGCC CCGG GGCC C2
+ + + + CCGG GGCC CCGG GGCC D1
+ + CCGG GGCC CCGG GGCC D2
+ + CCGG GGCC CCGG GGCC D3

#The combination of four letter represents the specific restriction endonuclease sequence and the underscored letter represent the restriction endonuclease digestion site. ▴Represented presence (+) of a band resulted from the EcoRI/HpaII-digested or EcoRI/MspI-digested genomic DNA of parental B. napus and nine additions. ▾ Represented absence (-) of a band resulted from the EcoRI/HpaII-digested or EcoRI/MspI -digested genomic DNA of parental B. napus and nine additions. ++,+-, -+ and -- represented CCGG/GGCC or C5mCGG/GGCC, 5mCCGG/GGCC, C5mCGG/GGC5mC and 5mCCGG/GGCC5m, respectively.