Table 2.
miRNA-name | Sequence | Length | GC% | Expression (TPM) | Folding energy | MFEI | Unigene | ||||
---|---|---|---|---|---|---|---|---|---|---|---|
Female | Male | Unigene | Start | End | Strand | ||||||
aof-miRn01 | AAAUUCCAGACGGUCGGCGGGC | 22 | 63.2 | 11.43 | 11.92 | –193.90 | 1.53 | UN09382 | 28 | 210 | + |
–212.60 | 1.44 | UN07381 | 24 | 233 | + | ||||||
aof-miRn02 | AAAUUCCAGACGGUCGGCGGGCU | 23 | 60.9 | 10.29 | 12.24 | –213.30 | 1.44 | UN07381 | 23 | 234 | + |
aof-miRn03 | AAUAGAUGAGAUGAGAUGAGUUGU | 24 | 33.4 | 5.03 | 7.06 | –87.94 | 2.00 | UN00358 | 39 | 209 | + |
aof-miRn04 | AAUUCCAGACGGUCGGCGGGC | 21 | 66.7 | 10.29 | 14.12 | –212.60 | 1.44 | UN07381 | 24 | 233 | + |
–193.90 | 1.53 | UN09382 | 28 | 210 | + | ||||||
aof-miRn05 | AAUUCCAGACGGUCGGCGGGCU | 22 | 63.6 | 11.89 | 13.49 | –213.30 | 1.44 | UN07381 | 23 | 234 | + |
aof-miRn06 | AGACGGUCGGCGGGCUGAAU | 20 | 65.0 | 20.12 | 28.39 | –215.50 | 1.44 | UN07381 | 19 | 238 | + |
aof-miRn07 | AGACGGUCGGCGGGCUGAAUC | 21 | 66.7 | 24.46 | 33.10 | –215.50 | 1.43 | UN07381 | 19 | 239 | + |
aof-miRn08 | AGCGGGGUGUUCUGAUCCAUA | 21 | 52.4 | 5.03 | 1.88 | –33.40 | 0.90 | UN45561 | 155 | 243 | + |
aof-miRn09 | AGCGGGGUGUUCUGAUCCAUACAA | 24 | 50.0 | 9.83 | 3.29 | –33.40 | 0.90 | UN45561 | 155 | 243 | + |
aof-miRn10 | AUGCGAGCGGGGUGUUCUGAUCCA | 24 | 58.3 | 18.98 | 13.49 | –42.70 | 1.02 | UN45561 | 150 | 248 | + |
aof-miRn11 | AUUCCAGACGGUCGGCGGGC | 20 | 70.0 | 13.95 | 10.67 | –193.90 | 1.53 | UN09382 | 28 | 210 | + |
–212.60 | 1.44 | UN07381 | 24 | 233 | + | ||||||
aof-miRn12 | AUUCCAGACGGUCGGCGGGCU | 21 | 66.7 | 14.86 | 9.73 | –213.30 | 1.44 | UN07381 | 23 | 234 | + |
aof-miRn13 | CAGACGGUCGGCGGGCUGAA | 20 | 70.0 | 9.15 | 12.39 | –215.20 | 1.43 | UN07381 | 19 | 237 | + |
aof-miRn14 | CAGACGGUCGGCGGGCUGAAU | 21 | 66.7 | 23.32 | 31.69 | –215.50 | 1.44 | UN07381 | 19 | 238 | + |
aof-miRn15 | CAGACGGUCGGCGGGCUGAAUC | 22 | 68.2 | 25.15 | 40.94 | –215.70 | 1.42 | UN07381 | 18 | 239 | + |
aof-miRn16 | CCAGACGGUCGGCGGGCUGA | 20 | 75.0 | 13.49 | 16.00 | –215.20 | 1.43 | UN07381 | 20 | 236 | + |
aof-miRn17 | CCAGACGGUCGGCGGGCUGAA | 21 | 71.4 | 4.57 | 9.10 | –215.20 | 1.43 | UN07381 | 19 | 237 | + |
aof-miRn18 | CCAGACGGUCGGCGGGCUGAAU | 22 | 68.2 | 18.29 | 17.88 | –215.70 | 1.44 | UN07381 | 18 | 238 | + |
aof-miRn19 | CCAGACGGUCGGCGGGCUGAAUC | 23 | 69.6 | 22.64 | 33.26 | –215.70 | 1.43 | UN07381 | 18 | 239 | + |
aof-miRn20 | CCUGGUUCCCUGUAUGCCACC | 21 | 61.9 | 27.44 | 18.51 | –45.50 | 0.99 | UN21911 | 249 | 331 | + |
aof-miRn21 | CGAAAUUCCAGACGGUCGGCGGGC | 24 | 66.7 | 8.69 | 8.16 | –193.90 | 1.53 | UN09382 | 28 | 210 | + |
–212.60 | 1.44 | UN07381 | 24 | 233 | + | ||||||
aof-miRn22 | CGAACCCUGGUCGAUUGUUUU | 21 | 47.6 | 10.29 | 12.71 | –52.44 | 0.65 | UN41527 | 26 | 234 | + |
aof-miRn23 | CGAACCCUGGUCGAUUGUUUUU | 22 | 45.5 | 2.52 | 6.43 | –53.04 | 0.65 | UN41527 | 25 | 235 | + |
aof-miRn24 | CGAUUGUUUUUGGGAUGCGCU | 21 | 47.6 | 4.34 | 5.65 | –32.70 | 0.62 | UN21248 | 7 | 116 | + |
aof-miRn25 | CUGGUUCCCUGUAUGCCACCC | 21 | 61.9 | 25.38 | 17.26 | –45.50 | 1.03 | UN21911 | 250 | 330 | + |
aof-miRn25* | GCGUGCAUGGAACCAAGCAUG | 21 | 52.2 | 5.11 | 2.56 | –93.80 | 1.00 | UN21911 | 250 | 330 | + |
aof-miRn26 | GAAAUUCCAGACGGUCGGCGGGC | 23 | 65.2 | 7.77 | 6.27 | –193.90 | 1.53 | UN09382 | 28 | 210 | + |
–212.60 | 1.44 | UN07381 | 24 | 233 | + | ||||||
aof-miRn27 | GAAAUUCCAGACGGUCGGCGGGCU | 24 | 62.5 | 6.63 | 5.80 | –213.30 | 1.44 | UN07381 | 23 | 234 | + |
aof-miRn28 | GUGCCUGGUUCCCUGUAUGCC | 21 | 61.9 | 730.06 | 744.81 | –50.40 | 1.03 | UN21911 | 246 | 334 | + |
aof-miRn29 | GUGCUUCCCCUCGUUGUCACC | 21 | 61.9 | 0.00 | 10.04 | –43.60 | 0.78 | UN05913 | 103 | 192 | + |
aof-miRn30 | UAAAUAGUCGGGGUUGCCAACC | 22 | 50.0 | 3.89 | 9.57 | –43.20 | 1.20 | UN31232 | 131 | 39 | - |
aof-miRn31 | UAAAUAGUCGGGGUUGGCAACC | 22 | 50.0 | 5.94 | 6.27 | –43.20 | 1.14 | UN42854 | 153 | 60 | - |
–68.90 | 1.50 | UN31232 | 27 | 143 | + | ||||||
aof-miRn32 | UGAUUAUGUAGUGGUCCCUCC | 21 | 47.6 | 7.77 | 9.88 | –63.94 | 0.98 | UN22735 | 161 | 338 | + |
aof-miRn33 | UGGCGUGCAUGGAAUCAAGCA | 21 | 52.4 | 13.72 | 5.80 | –49.10 | 1.02 | UN21911 | 247 | 333 | + |
aof-miRn34 | UGGUCGAUUGUUUUUGGGAUG | 21 | 42.9 | 26.75 | 21.49 | –30.90 | 0.63 | UN21248 | 10 | 112 | + |
aof-miRn35 | UGGUCGAUUGUUUUUGGGAUGC | 22 | 45.5 | 4.57 | 6.12 | –31.40 | 0.63 | UN21248 | 9 | 113 | + |
aof-miRn36 | UGUGAUUAUGUAGUGGUCCCUCC | 23 | 47.8 | 8.46 | 6.12 | –63.94 | 0.98 | UN22735 | 161 | 338 | + |
aof-miRn37 | UGUGAUUAUGUAGUGGUCCCUCCA | 24 | 45.8 | 5.72 | 5.96 | –65.64 | 1.01 | UN22735 | 160 | 339 | + |
aof-miRn38 | UUGCCUACUCCGCCCAUUCCCC | 22 | 63.6 | 251.74 | 222.75 | –45.10 | 1.13 | UN22494 | 52 | 141 | + |
aof-miRn39 | UUUCCAAUGCCUCCCAUUCCGG | 22 | 54.5 | 109.06 | 102.91 | –23.70 | 0.91 | UN16232 | 530 | 464 | - |
–27 | 0.96 | UN17918 | 30 | 96 | + |
TPM transcripts per million, MFEI minimal folding free energy index of the hairpin structures
* indicated miRNA star (miRNA*)