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. 2016 Apr 12;11(4):e0153333. doi: 10.1371/journal.pone.0153333

Fig 6. Variability of RIN TF binding sites in CYC-B promoters.

Fig 6

The nucleotide sequences upstream of CYC-B gene in WT, Beta (B) type and LA0348 type are diagrammatically represented with green bars. The red coloured portion in LA0348 type represents the probable NUPT fragment. The RIN binding sites are indicated with arrows, and the altered sites are represented by triangles above the bars. The exact position of the first nucleotide in each case is mentioned below the bars. Different RIN binding sequences predicted by PLACE are indicated with different colours. The element CCTATAAAGG is CARGATCONSENSUS. The elements CAAAATATTG, CAAAAAAAAG, CATATTTTAG, CAATATAAAG and CAAATAATAG are CARGCW8GAT type and the element CCAATATAAAGG is CARGNCAT type.