Table 4.

SNPs and indels frequencies for all mitochondrial sites containing variants.

Site	N2 Prog	MA523	MA526	MA529	MA553	MA574	gas-1 Prog	MA412	MA419	MA429	MA431	MA438
SNPs
211	0.008	0.003	0.004	0.006	0.002	0.002	0.000	0.011	0.020	0.018	0.036	0.023
450	0.000	0.000	0.000	0.008	0.000	0.000	0.007	0.000	0.006	0.002	0.041	0.007
5422	0.000	0.000	0.008	0.004	0.000	0.002	0.006	0.008	0.009	0.004	0.026	0.013
8274	0.041	0.000	0.001	0.002	0.000	0.000	0.000	0.000	0.008	0.000	0.002	0.000
8439	0.002	0.000	0.000	0.000	0.000	0.000	0.050	0.374	0.000	0.000	0.000	1.000
8731	0.001	0.060	0.002	0.000	0.000	0.002	0.000	0.000	0.000	0.002	0.000	0.000
INDELS
3235	0.021	0.050	0.796	0.038	0.041	0.348	0.013	0.021	0.029	0.047	0.043	0.033
8653	0.001	0.003	0.018	0.000	0.000	0.000	0.003	0.002	0.000	0.000	0.002	0.000
9954	0.002	0.000	0.000	0.000	0.000	0.000	0.045	0.000	0.000	0.000	0.000	0.002
11721	0.000	0.063	0.090	0.002	0.000	0.392	0.000	0.000	0.003	0.002	0.004	0.000

Each site which experienced a variant in any of the 12 lines is listed by reference position in WS242 (base pair). Frequencies which appear in Tables 2, 3 are in bold. A value of “0” indicates no variant allele occurred for at this site for the line.