TABLE III.
Haplotype | Estimated frequency of haplotype* | χ2 | df | P value | |
---|---|---|---|---|---|
SNP 3–5 | 1 1 | 0.35 | 0.99 | 1 | 0.32 |
2 1 | 0.05 | 0.41 | 1 | 0.52 | |
1 2 | 0.47 | 0.001 | 1 | 0.97 | |
2 2 | 0.12 | 3.18 | 1 | 0.07 | |
Global | 3.78 | 3 | 0.29 | ||
SNP 6–7 | 1 1 | 89 | 0.03 | 1 | 0.86 |
2 1 | 7 | 1.13 | 1 | 0.29 | |
1 2 | 4 | 2.17 | 1 | 0.14 | |
Global | 3.09 | 2 | 0.21 | ||
SNP 8–11 | 1 1 | 0.40 | 0.76 | 1 | 0.38 |
2 1 | 0.036* | 2.59 | 1 | 0.11 | |
1 2 | 0.57 | 2.06 | 1 | 0.15 | |
Global | 3.45 | 2 | 0.18* | ||
SNP 6-7-8-11 | 1 1 1 1 | 0.33 | 2.15 | 3 | 0.14 |
2 1 1 1 | 0.06 | 1.87 | 3 | 0.17 | |
1 2 2 1 | 0.039* | 3.28 | 3 | 0.07 | |
1 1 1 2 | 0.56 | 1.94 | 3 | 0.16 | |
2 1 1 2 | 0.004* | 0.9995 | 3 | 0.32 | |
1 2 1 2 | 0.003* | 0.96 | 3 | 0.33 | |
Global | 9.26 | 5 | 0.099* | ||
Global | 6.69 | 3 | 0.08 |
P values of test of rare haplotypes, with frequencies less than 4%, are indicated with an asterisk.