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. 2016 Apr 14;17:287. doi: 10.1186/s12864-016-2601-x

Table 2.

Windows explaining a significant percentage (≥0.5) of genetic variance

Windows explaining ≥ 0.5 % of genetic variance SNP with highest model frequency within window
Traita Chr Pos (Mb) % of genetic variance explained Nb of SNPs Freq of iterations with (P > 0)b SNP namec SNP pos (bp)d Model freqe Allele freqf
pH20 18 3 1.29 401 0.94 AX-75894740 3342614 0.0111 0.652
pH20 28 4 1.01 328 0.85 AX-76384843 4097788 0.0090 0.294
pH20 28 3 0.64 437 0.92 AX-76383580 3856132 0.0092 0.294
pH20 18 6 0.58 342 0.86 AX-75894671 6670745 0.0075 0.340
pH28 12 7 0.55 302 0.81 AX-75723368 7630857 0.0070 0.288
pH28-20 6 4 0.66 350 0.86 AX-76958371 4259110 0.0074 0.724
pH28-20 10 16 0.50 372 0.89 AX-75591175 16460945 0.0066 0.298
pCO220 28 3 9.75 437 0.93 AX-76383461 3835952 0.0448 0.711
pCO220 28 4 4.49 328 0.89 AX-76385219 4167579 0.0239 0.706
pCO228 9 20 0.59 462 0.94 AX-75706074 19358758 0.0070 0.416
pCO228 1 110 0.54 194 0.38 AX-80866127 110487208 0.0098 0.510
pCO228 27 2 0.53 650 0.96 AX-76356017 2038872 0.0065 0.653
pCO228 10 3 0.50 447 0.91 AX-75607032 3037730 0.0069 0.626
pCO228-20 28 4 0.61 328 0.83 AX-76384843 4097788 0.0076 0.296
pCO228-20 23 2 0.57 388 0.86 AX-76282215 2594470 0.0071 0.435
pCO228-20 3 14 0.56 287 0.81 AX-76421954 14679413 0.0075 0.323
pCO228-20 10 1 0.50 393 0.86 AX-75601081 1816619 0.0080 0.339
pO228 13 5 0.57 277 0.79 AX-75758019 5130673 0.0070 0.531
BE20 18 3 0.68 401 0.93 AX-75894740 3342614 0.0103 0.652
BE20 18 6 0.52 342 0.84 AX-75906711 6859485 0.0078 0.554
BE28 27 2 0.70 650 0.97 AX-76359325 2733806 0.0076 0.473
BE28 1 172 0.54 202 0.67 AX-75342016 172010216 0.0094 0.683
BE28 21 4 0.50 521 0.91 AX-76247040 4491122 0.0078 0.321
HCO328 Z 30 4.11 74 0.47 AX-77209983 30284984 0.1864 0.671
HCO328 Z 8 3.10 24 0.27 AX-80958477 8485438 0.0719 0.357
HCO328 Z 5 2.22 62 0.33 AX-80834191 5042699 0.0931 0.634
HCO328 Z 33 2.09 45 0.28 AX-80973925 33940034 0.0543 0.608
HCO328 Z 35 1.67 128 0.50 AX-80901519 35319963 0.0589 0.379
HCO328 Z 7 1.47 2 0.9 AX-77264084 7705768 0.0806 0.311
HCO328 Z 70 1.45 55 0.28 AX-77257752 70210948 0.0625 0.376
HCO328 Z 69 1.31 113 0.40 AX-80879264 69810199 0.0525 0.370
HCO328 6 25 0.75 325 0.86 AX-76932184 25826439 0.0083 0.466
HCO328 Z 71 0.74 183 0.62 AX-80943753 71554374 0.0520 0.360
HCO328 6 26 0.53 291 0.83 AX-76933234 26203623 0.0092 0.493
TCO228 Z 69 3.63 113 0.46 AX-80879264 69810199 0.1357 0.370
TCO228 Z 30 3.04 74 0.44 AX-77209983 30284984 0.1424 0.671
TCO228 Z 8 2.30 24 0.25 AX-80958477 8485438 0.0859 0.357
TCO228 Z 33 1.73 45 0.28 AX-80973925 33940034 0.0667 0.608
TCO228 Z 5 1.60 62 0.29 AX-80834191 5042699 0.0700 0.634
TCO228 Z 7 1.23 2 0.7 AX-77264084 7705768 0.0707 0.311
TCO228 Z 70 0.91 55 0.26 AX-77257752 70210948 0.0434 0.376
TCO228 Z 35 0.80 128 0.48 AX-80901519 35319963 0.0419 0.379
TCO228 6 25 0.66 325 0.85 AX-76932184 25826439 0.0080 0.466
TCO228 26 3 0.51 616 0.98 AX-80958155 3785485 0.0079 0.513
TCO228-20 10 5 0.51 515 0.93 AX-75615576 5758221 0.0067 0.355
K20 10 16 0.76 372 0.92 AX-75589587 16018566 0.0041 0.249
K20 10 18 0.53 496 0.96 AX-75597981 18294286 0.0038 0.278
K20 12 17 0.53 242 0.72 AX-75701199 17759131 0.0043 0.646
K20 26 3 0.50 616 0.96 AX-76340450 3273628 0.0036 0.180
K28-20 12 16 1.29 246 0.75 AX-75696568 16220734 0.0036 0.650
K28-20 12 17 0.69 242 0.70 AX-75701149 17743731 0.0043 0.633
iCa28 26 3 0.52 616 0.96 AX-76343628 3922118 0.0076 0.550
Hct28 14 11 1.78 391 0.94 AX-75776707 11791127 0.0096 0.502
Hct28 1 169 1.17 196 0.83 AX-75336362 169571235 0.0110 0.714
Hct28 28 3 1.01 437 0.92 AX-76384000 3944019 0.0116 0.397
Hct28 28 4 0.93 328 0.91 AX-76385356 4197143 0.0113 0.408
Hct28 22 3 0.88 573 0.95 AX-76269662 3474970 0.0072 0.513
Hct28 10 16 0.59 372 0.90 AX-75589730 16057907 0.0070 0.254
Hb28 14 11 1.64 391 0.95 AX-75776707 11791127 0.0091 0.502
Hb28 1 169 1.33 196 0.83 AX-75337336 169979876 0.0121 0.322
Hb28 28 3 0.96 437 0.91 AX-76384000 3944019 0.0112 0.397
Hb28 28 4 0.94 328 0.92 AX-76385356 4197143 0.0103 0.408
Hb28 22 3 0.79 573 0.95 AX-76269662 3474970 0.0073 0.513
Hb28 10 16 0.60 372 0.90 AX-75590148 16177101 0.0077 0.295
Hb28 1 170 0.50 176 0.65 AX-75337520 170074107 0.0083 0.676
Hb28-20 22 3 1.71 573 0.96 AX-76272400 3857927 0.0072 0.533
sO228 25 0 1.23 364 0.91 AX-75758019 5130673 0.0070 0.531
sO228 24 3 0.55 581 0.94 AX-76328225 36480 0.0111 0.618
sO228-20 17 6 0.53 324 0.83 AX-75872796 6506736 0.0066 0.412
sO228-20 17 7 0.53 467 0.88 AX-75875111 7125729 0.0066 0.172
Glu20 10 4 0.67 548 0.95 AX-80975590 4452892 0.0067 0.740
Glu28 22 3 1.09 573 0.94 AX-76273189 3966852 0.0070 0.585
Glu28 Z 5 0.79 62 0.28 AX-80834191 5042699 0.0246 0.634
Glu28 Z 70 0.74 55 0.24 AX-77257752 70210948 0.0266 0.376
Glu28 Z 69 0.64 113 0.42 AX-80879264 69810199 0.0187 0.371

aBlood chemistry components were measured pre-heat (day 20), on the seventh day of heat treatment (day 28), and the calculated differential due to heat (day 28–20)

bFrequency in which the window was included in the MCMC iterations (post-burn-in)

cSNP within the specified window which was most frequently included in the MCMC iterations (post-burn-in), and is therefore predicted to have the greatest effect on the phenotype

dPosition of SNPs in base pairs on Gallus-gallus (version 4.0) chromosome

eFrequency in which the SNP was included in the MCMC iterations (post-burn-in) model

fAllele frequency of the SNP in the genotyped population (N = 458)