Table 6.
Most promising high-impact variants in genes contributing to stallion fertility
| Loci for stallion fertility | Loci for stallion infertility | No obvious relation to stallion reproduction | |||||
|---|---|---|---|---|---|---|---|
| Class I | Class II | Class III | |||||
| SNP ID | Gene | SNP ID | Gene | SNP ID | Gene | SNP ID | Gene |
| g.37455302G>A | NOTCH1 | g.74610774C>T | CFTR | g.79813487A>T | ENSECAG00000020135 | g.32635273T>C | BTNL2 |
| g.56937215C>T | OVGP1 | g.25184403G>C | ENSECAG00000021286 | g.7083659A>T | SLC9A3R1 | ||
| g.45985131A>G | FBXO43 | g.6704968C>T | GHRL | ||||
| g.82699661C>T | TSSK6 | g.26775767G>C | NEURL1 | ||||
| g.40694339G>A | PKD1 | g.77472655G>C | KDR | ||||
| g.19034281C>T | FOXP1 | ||||||
| g.35255390 T>C | TCP11 | ||||||
| g.4323852G>A | SPATA31E1 | ||||||
| g.37453246G>C | NOTCH1 | ||||||
Three classes of high-impact variants with corresponding single nucleotide polymorphism (SNP) identities (ID) and gene are given