Table 2.
Functional Classes Significantly Affected by Selective Sweeps in Medicago truncatula Populations.
| Functional Class (Mercator) | Pop | Sample Freq. | Genome Freq. | P valuea | Gene Model | GO Terms (Gene Module) | KEGG Pathway | |
|---|---|---|---|---|---|---|---|---|
| Cell organization cytoskeleton actin binding | FW | 1 | 4 | 0.004 | Medtr4g127660 | Growth | (1) | — |
| Glycolysis plastid branch PGM | FW | 1 | 4 | 0.004 | Medtr1g102010 | — | (3) | Sugar and nucleotide metabolism |
| Hormone metabolism ethylene synthesis or degradation | FW | 1 | 22 | 0.019 | Medtr3g117420 | — | (4) | — |
| Protein synthesis ribosomal protein eukaryotic 60 S subunit L34 | FW | 1 | 11 | 0.006 | Medtr2g021720 | Structural molecule | (2) | — |
| Signaling phosphoinositides | FW | 1 | 17 | 0.025 | Medtr3g116250 | Symplast | (1) | Phosphatidylinositol signaling inositol phosph metabolism |
| Transport cyclic nucleotide or calcium regulated channels | C | 1 | 25 | 0.011 | Medtr4g130820 | — | Plant–pathogen interaction | |
| Protein targeting chloroplast | C | 1 | 43 | 0.023 | Medtr8g032340 | — | Protein export | |
| RNA regulation of transcription—DNA methyltransferases | C | 1 | 22 | 0.011 | Medtr4g123600 | — | — | |
aBin significance was corrected with an FDR threshold of 5%.