Table 2.
Z. japonica ‘Nagirizaki’ |
Z. matrella ‘Wakaba’ |
Z. pacifica ‘Zanpa’ |
||||||||
---|---|---|---|---|---|---|---|---|---|---|
Total | mkhc | mk | br | Total | mkhc | mk | Total | mkhc | mk | |
Total | ||||||||||
Number of sequences | 59,271 | 16,205 | 37,605 | 5,461 | 95,079 | 24,398 | 70,681 | 65,252 | 16,455 | 48,797 |
Total length (b) | 49,483,110 | 16,398,294 | 27,579,822 | 5,504,994 | 76,439,178 | 23,712,921 | 52,726,257 | 52,368,507 | 16,358,223 | 36,010,284 |
Ave. length (b) | 835 | 1,012 | 733 | 1,008 | 804 | 972 | 746 | 803 | 994 | 738 |
Max. length (b) | 11,838 | 11,838 | 6,666 | 5,439 | 13,647 | 13,647 | 6,240 | 14,421 | 14,421 | 6,735 |
Min. length (b) | 108 | 150 | 150 | 108 | 150 | 153 | 150 | 150 | 150 | 150 |
N50 length (b) | 1,119 | 1,254 | 987 | 1,275 | 1,065 | 1,179 | 999 | 1,062 | 1,206 | 978 |
G+C% | 59.3 | 53.2 | 63.2 | 58.3 | 59.6 | 52.6 | 62.7 | 59.6 | 52.7 | 62.8 |
≥100 b | ||||||||||
Number of sequences | 59,271 | 16,205 | 37,605 | 5,461 | 95,079 | 24,398 | 70,681 | 65,252 | 16,455 | 48,797 |
Total length (b) | 49,483,110 | 16,398,294 | 27,579,822 | 5,504,994 | 76,439,178 | 23,712,921 | 52,726,257 | 52,368,507 | 16,358,223 | 36,010,284 |
Ave. length (b) | 835 | 1,012 | 733 | 1,008 | 804 | 972 | 746 | 803 | 994 | 738 |
≥500 b | ||||||||||
Number of sequences | 36,762 | 12,446 | 20,166 | 4,150 | 58,044 | 18,851 | 39,193 | 39,673 | 12,864 | 26,809 |
Total length (b) | 41,915,830 | 15,083,250 | 21,825,114 | 5,007,466 | 63,962,067 | 21,739,386 | 42,222,681 | 43,778,979 | 15,084,588 | 28,694,391 |
Ave. length (b) | 1,140 | 1,212 | 1,082 | 1,207 | 1,102 | 1,153 | 1,077 | 1,103 | 1,173 | 1,070 |
≥1 kb | ||||||||||
Number of sequences | 17,091 | 6,436 | 8,605 | 2,050 | 25,866 | 9,153 | 16,713 | 17,496 | 6,342 | 11,154 |
Total length (b) | 27,773,167 | 10,647,366 | 13,635,474 | 3,490,327 | 40,863,282 | 14,576,319 | 26,286,963 | 27,907,539 | 10,272,498 | 17,635,041 |
Ave. length (b) | 1,625 | 1,654 | 1,585 | 1,703 | 1,580 | 1,593 | 1,573 | 1,595 | 1,620 | 1,581 |
≥5 kb | ||||||||||
Number of sequences | 56 | 41 | 10 | 5 | 53 | 41 | 12 | 42 | 35 | 7 |
Total length (b) | 342,564 | 262,044 | 54,009 | 26,511 | 350,736 | 283,644 | 67,092 | 277,953 | 239,226 | 38,727 |
Ave. length (b) | 6,117 | 6,391 | 5,401 | 5,302 | 6,618 | 6,918 | 5,591 | 6,618 | 6,835 | 5,532 |