Table 2. List of potential heterozygous SNP loci, their location and effect on protein coding genes.
Chr. # | Position | Product type | Locus | Type | Protein effect |
---|---|---|---|---|---|
2 | 125767 | Protein kinase | ECU02_1130 | Indel | Frame shift |
3 | 129823 | Phosphoinositide polyphosphatase | ECU03_1160 | SNP | Substitution |
3 | 142693 | Hypothetical | ECU03_1300 | SNP | Substitution |
4 | 72422 | Vacuolar sorting-associated protein | ECU04_0690 | Indel | Frame shift |
5 | 123607 | DNA polymerase (catalyticdomain) | ECU05_0990 | SNP | None |
5 | 151681 | Elongation factor | ECU05_1190 | SNP | Substitution |
6 | 101457 | Helicase | ECU06_0820 | SNP | None |
6 | 153782 | Synthase | ECU06_1230 | SNP | Substitution |
6 | 155585 | Hypothetical | ECU06_1240 | SNP | Substitution |
8 | 59630 | Intergenic | — | SNP | — |
8 | 63521 | Condensin subunit G | ECU08_0610 | SNP | Substitution |
8 | 69228 | DNA-directed RNA Pol subunit E | ECU08_0650 | SNP | Substitution |
8 | 96248 | Hypothetical | ECU08_0910 | SNP | Substitution |
8 | 98977 | Hypothetical | ECU08_0940 | SNP | Substitution |
8 | 99061 | Hypothetical | ECU08_0940 | SNP | Substitution |
8 | 136283 | WD40 | ECU08_1250 | SNP | Substitution |
9 | 21973 | Helicase | ECU09_0150 | SNP | None |
10 | 231683 | Synthetase | ECU10_1790 | SNP | Substitution |
11 | 105475 | Intergenic | — | SNP | — |
11 | 156282 | Intergenic | — | SNP | — |
11 | 160932 | Lipid transport protein | ECU11_1340 | Indel | Frame shift |
11 | 216182 | Man1 domain-containing protein | ECU11_1790 | SNP | None |
11 | 241539 | SMC domain-containing protein | ECU11_2000 | SNP | None |
Abbreviations: Chr., chromosome; SMC, structural maintenance of chromosome; SNP, single-nucleotide polymorphism.