Table 4. Revised naming system and basic statistics for P. x hortorum and other sect. Ciconium rpoA ORFs.
Old P. x hortorum ORF name | New ORF name | Length in bp/aa | P. tongaense (bp/aa) | P. alchemill. (bp/aa) | P. quinque. (bp/aa) | pairwise identity (%) | identical sites (%) |
---|---|---|---|---|---|---|---|
ORF574 | ORF597 | 1794/597 | 1815/604 | 1794/597 | 1794/597 | 99.40 | 98.80 |
ORF365 | ORF578 | 1737/578 | 1737/578 | 1737/578 | 1737/578 | 99.50 | 99 |
ORFs332+221 | ORF521 | 1566/521 | 1554/517 | 702/233* | 1560/519 | 92.70 | 87 |
*P. alchemilloides ORF521 homolog ends after 702 bp but is otherwise in frame through conserved stop codon after 1470 bp/490aa.