Table 5.
SNP | Annotation | Gene | MESA-A | CARDIA-A | CHS-A | MESA-E | CARDIA-E | CHS-E | FHS |
---|---|---|---|---|---|---|---|---|---|
rs4420638 | Downstream | APOC1 | 0.03 | 0.03 | 0.19 | 0.26 | 0.49 | ||
rs660240 | 3UTR | CELSR2 | 0.24 | 0.07 | 0.26 | 0.22 | 0.15 | ||
rs445925 | Upstream | APOC1 | 0.03 | 0.17 | 0.25 | 0.32 | 0.31 | 0.42 | |
rs6511720 | Intron | LDLR | 0.16 | 0.23 | 0.16 | 0.20 | 0.28 | 0.38 | |
rs964184 | Downstream | ZPR1 | 0.08 | 0.24 | 0.12 | 0.15 | |||
rs2954021 | Intron | LOC105375745 | 0.03 | 0.15 | 0.10 | 0.07 | |||
rs9302635 | Intron | DHX38 | 0.07 | 0.05 | 0.02 | 0.10 | |||
rs7254892 | Intron | PVRL2 | 0.49 | ||||||
rs13414987 | Downstream | APOB | |||||||
rs520861 | Downstream | TDRD15 | 0.23 | 0.25 | 0.04 | 0.10 | 0.10 | 0.14 | |
rs4803770 | Downstream | APOC1 | 0.10 | 0.16 | 0.02 | ||||
rs2867314 | Intron | LUZP1 | 0.09 | ||||||
rs1367117 | Missense | APOB | 0.13 | 0.11 | 0.17 | ||||
rs9939224 | Intron | CETP | 0.23 | ||||||
rs6669785 | Intron | LEPR | 0.13 | ||||||
rs4148817 | Intron | ABCB4 | 0.10 | ||||||
rs38117588 | Intron | Ipcef1 | 0.08 | ||||||
rs12357364 | Intron | RNLS | 0.07 | ||||||
rs1544410 | Upstream | VDR | 0.09 | ||||||
rs4384362 | Intron | PDGFD | 0.16 | ||||||
rs1002054 | Intron | MAPK1IP1L | 0.16 | ||||||
rs1470641 | Intron | ITPR2 | 0.18 | 0.07 | 0.20 | ||||
rs3846662 | Intron | HMGCR | 0.14 | 0.05 | 0.05 | 0.04 | 0.14 | ||
rs12982656 | Intron | INSR | 0.03 | 0.17 | 0.08 |
Note: Zero estimates are left blank. Annotation is based on dbSNP (http://www.ncbi.nlm.nih.gov/snp).