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. Author manuscript; available in PMC: 2016 Apr 18.
Published in final edited form as: Cell Rep. 2015 Apr 2;11(1):13–21. doi: 10.1016/j.celrep.2015.03.014

Figure 3.

Figure 3

Effect of protein context on proline pauses. A) Pause scores for PP(X) where X is the codon in the ribosomal A site. These numbers represent the average of the scores computed for each of the four efp knockout datasets, with standard error of the mean. B) Effect of the −3 residue (Z) in the nascent polypeptide on pausing at ZPP(X). C) Effect of the −2 residue in the nascent peptide on pausing at Pro-Pro, with the second Pro codon in the A site. D) Average ribosome density at one, two, or three Pro codons in the combined Δefp3 and Δefp4 data. Inset: close-up of the density 30 – 60 nt downstream of the pause site. See also Figure S1 and Table S2.