Deconstruction of lead compound 2 into retrosynthetic
fragments 3–6 was used to assess
the binding affinity, ligand efficiency (LE), and group efficiency
(GE) contribution of the individual components. The three aromatic
rings decorating the aminopyrazole core of lead compound 2 have been labeled Ar1, Ar2, and Ar3 as illustrated, which refers
to the orientation the rings occupy in the X-ray crystal structure
of 2 in complex with CYP121 (Figure 1). Retrofragments 3 and 4 represent Ar1 and Ar2, respectively. The lower panel tabulates
the binding affinity (KD) and LE and GE
properties of compounds from the sequential reconstruction of lead 2 from component monoaryl (3 and 4) and biaryl (5 and 6) retrofragments. KD values were determined using ITC. LE was calculated
from the Gibbs free energy of binding divided by the number of heavy
atoms (ΔG/HA).29,30 GE contributions
of the three aromatic rings Ar1, Ar2, and Ar3 were calculated from
the change in Gibbs free energy per added heavy atom (−ΔΔG/ΔHA) as the retrofragments were
progressively recombined to form lead compound 2.31KD previously reported.28