Table 3.
List of the enriched KEGG pathways compared with control group.
| Pathway ID | KEGG pathway | DEGs with pathway annotation | All genes with pathway | ||
|---|---|---|---|---|---|
| T3 vs. CK (471) | T24 vs. CK (234) | T72 vs. CK (462) | annotation (25092) | ||
| ko04141 | Protein processing in endoplasmic reticulum | 93(19.6%)** | 31(13.5%)** | 84(18.2%)** | 677(2.7%) |
| ko04712 | Circadian rhythm-plant | 12 (2.6%)** | 12 (5.2%)** | 23(5.0%)** | 229 (0.9%) |
| ko00904 | Diterpenoid biosynthesis | 9 (1.9%)** | 3(1.3%)* | 6(1.3%)** | 80 (0.3%) |
| ko00941 | Flavonoid biosynthesis | 19 (4.0%)** | 9 (3.8%)** | 14 (3.0%)** | 241 (1.0%) |
| ko03040 | Spliceosome | 32 (6.8%)** | 14 (6.1%) | 33 (3.0%)** | 1055(4.2%) |
| ko04070 | Phosphatidylinositol signaling system | 7 (1.5%)* | 4 (1.7%) | 9(2.0%)** | 172(0.7%) |
| ko04144 | Endocytosis | 76 (16.1%)** | 27 (11.7%) | 61(13.2%) | 3038 (12.1%) |
| ko04626 | Plant-pathogen interaction | 16(3.4%) | 24 (10.4%)** | 21 (4.6%) | 1108 (4.4%) |
| ko00940 | Phenylpropanoid biosynthesis | 9 (1.9%) | 4 (1.7%) | 14 (3.0%)* | 413 (1.7%) |
*
Indicated the significant difference (p < 0.05);
**
Indicated the very significant difference (p < 0.01).