Table 4.
pathway analysis of Firemaster 550 metabolomic data | |||||||
---|---|---|---|---|---|---|---|
increased metabolites | |||||||
totalb | expectedc | hitsd | raw pe | Holm adjustf | FDRg | organismh | |
nitrogen metabolism | 9 | 0.047 | 2 | 8.29 × 10−04 | 0.067 | 0.067 | D.r.h |
arginine and proline metabolism | 43 | 0.225 | 2 | 0.019 | 1 | 0.699 | D.r. |
aminoacyl-tRNA biosynthesis | 67 | 0.350 | 2 | 0.044 | 1 | 0.749 | D.r. |
decreased metabolites | |||||||
---|---|---|---|---|---|---|---|
totalb | expectedc | hitsd | raw pe | Holm adjustf | FDRg | organismh | |
valine, leucine and isoleucine biosynthesis | 13 | 0.090 | 3 | 5.62 × 10−05 | 0.004 | 0.004 | D.r. and D.m. |
aminoacyl-tRNA biosynthesis | 67 | 0.463 | 4 | 5.28 × 10−04 | 0.041 | 0.021 | D.r. and D.m. |
valine, leucine and isoleucine degradation | 35 | 0.242 | 3 | 0.001 | 0.093 | 0.032 | D.r. and D.m. |
Analysis was performed with MetaboAnalyst 2.0 and included D. rerio (D.r.) and D. melanogaster (D.m.) pathways with more than one hit and a raw p-value <0.05.
Total genes in biological pathway.
Number of genes expected in a random data set.
Number of hits in FM550 data.
p-Value calculated from raw data.
p-Value adjusted for multiplicity.
False discovery rate.
Organism metabolome that resulted in significant findings.
Also seen in D. melanogaster. If pathway was affected in both species, numbers represent data for the more significant species.